View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_35 (Length: 212)
Name: NF8448_low_35
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 1033278 - 1033458
Alignment:
| Q |
15 |
ttattctcaacaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgattttgaaaaattctcaccaccgagaa |
114 |
Q |
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| T |
1033278 |
ttattctcaacaggttttcaaccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgattttgaaaaattctcaccaccgagaa |
1033377 |
T |
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| Q |
115 |
ggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaagtttg |
195 |
Q |
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| T |
1033378 |
ggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaagtttg |
1033458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 1043687 - 1043849
Alignment:
| Q |
32 |
tcagccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgattttgaaaaattctcaccaccgagaaggctaaggacagatgaa |
131 |
Q |
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| T |
1043687 |
tcagccaaatggacaagcaccgatatcttctacggacaagtcactcacaagcaatgatgtacaacaattcacgaaaccgagacggctaagcacagatgaa |
1043786 |
T |
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| Q |
132 |
attcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaagttt |
194 |
Q |
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| T |
1043787 |
attcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagttt |
1043849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 1071086 - 1071190
Alignment:
| Q |
86 |
tgattttgaaaaattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagct |
185 |
Q |
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| T |
1071086 |
tgatgttgcaaaattcacaccaccaaggcggctaaggacagatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgctattgaagct |
1071185 |
T |
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| Q |
186 |
ggtaa |
190 |
Q |
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||||| |
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| T |
1071186 |
ggtaa |
1071190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 1065356 - 1065451
Alignment:
| Q |
95 |
aaaattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa |
190 |
Q |
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| T |
1065356 |
aaaattcacaccgcctagacggctaaggacagatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
1065451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 1052958 - 1053051
Alignment:
| Q |
97 |
aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa |
190 |
Q |
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| T |
1052958 |
aattcacacaaccgaggaggctaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
1053051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 1046298 - 1046391
Alignment:
| Q |
97 |
aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa |
190 |
Q |
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||||| ||||||| || |||||||| |||| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| |
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| T |
1046298 |
aattcacaccaccaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
1046391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 1058294 - 1058387
Alignment:
| Q |
97 |
aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa |
190 |
Q |
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| T |
1058294 |
aattcacaccgcccagacggctaaggatagatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa |
1058387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 1049941 - 1050008
Alignment:
| Q |
22 |
caacaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgat |
89 |
Q |
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| T |
1049941 |
caacagtttatcagccgaatggacaagcaccgatatcttctacaaacaagtcactcacaagcgatgat |
1050008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 1070997 - 1071058
Alignment:
| Q |
15 |
ttattctcaacaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcact |
76 |
Q |
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||||||||||||| || |||||| ||||| |||| ||| |||||||||||||||||| |||| |
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| T |
1070997 |
ttattctcaacagtttatcagccaaatgggcaagcaccaatatcttctacagacaagccact |
1071058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 1065267 - 1065319
Alignment:
| Q |
24 |
acaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcact |
76 |
Q |
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| T |
1065267 |
acagtttttcagccaaatggacaggcaccaatatcatctacagacaagtcact |
1065319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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