View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8448_low_4 (Length: 528)

Name: NF8448_low_4
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8448_low_4
NF8448_low_4
[»] chr5 (18 HSPs)
chr5 (1-512)||(8643202-8643714)
chr5 (28-495)||(8635802-8636280)
chr5 (28-176)||(8677197-8677344)
chr5 (304-428)||(8527857-8527982)
chr5 (305-428)||(8640449-8640573)
chr5 (356-495)||(8677342-8677482)
chr5 (285-377)||(9002262-9002354)
chr5 (295-394)||(9075307-9075406)
chr5 (282-375)||(8420392-8420485)
chr5 (131-189)||(8545351-8545409)
chr5 (311-428)||(8534438-8534558)
chr5 (121-215)||(8640227-8640317)
chr5 (301-377)||(8549071-8549148)
chr5 (141-178)||(8549193-8549230)
chr5 (120-175)||(8527663-8527719)
chr5 (131-175)||(9075532-9075576)
chr5 (120-166)||(1601347-1601392)
chr5 (298-330)||(27458082-27458114)
[»] chr4 (1 HSPs)
chr4 (304-428)||(9442024-9442149)
[»] chr7 (2 HSPs)
chr7 (202-377)||(48362758-48362933)
chr7 (200-377)||(35777264-35777444)
[»] chr8 (2 HSPs)
chr8 (45-201)||(44438654-44438811)
chr8 (291-357)||(44438492-44438558)
[»] chr1 (2 HSPs)
chr1 (337-428)||(5129819-5129911)
chr1 (310-363)||(26324948-26325001)


Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 8643202 - 8643714
Alignment:
Q  1 aaagagatataggtgattaggaacttaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaa 100  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643202 aaagagatatcggtgattaggaactaaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaa 8643301  T
Q  101 aaccatagatgataactactgaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgata 200  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8643302 aaccatagatgataattactgaacatctgaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttctaaatatgata 8643401  T
Q  201 attgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactc-ttcgtcaaaagcctctcacagaaggaggagggtacttgtc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  8643402 attgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttgtactctttcatcaaaagcctctcacagaaggaggagggtacttgtc 8643501  T
Q  300 aagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaagtgcc 399  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643502 aagtcatcattcaagatcttcatttttttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaagtgcc 8643601  T
Q  400 taaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattcttccccattaga 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||     
T  8643602 taaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattcttcaccatcagg 8643701  T
Q  500 ctgaggaaaatat 512  Q
    |||||||||||||    
T  8643702 ctgaggaaaatat 8643714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 28 - 495
Target Start/End: Original strand, 8635802 - 8636280
Alignment:
Q  28 aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc 127  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8635802 aatgaaatagttgagcaacaatcattgtctttttctaaaccattgccaacaagataacaagtcaatctagtaaaaccatagatgataactactgaacatc 8635901  T
Q  128 ttaattaaagtttac-aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttct---aaatatgataattgtgatttagcataacccttc 223  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||   |||||| |||||||||||||||||||| |||||    
T  8635902 ttaattaaagtttacaaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttctttcaaatatcataattgtgatttagcataaaccttc 8636001  T
Q  224 cttttgtatgaaaaatccttctttttagttata-----ctcttcgtcaaaagcc-tctcacagaaggaggagggtacttgtcaagtcatcattcaagatc 317  Q
    ||  |||||||||| ||||| ||||||||| ||     |||||| ||||||||| | ||   |||||||||| | ||||| ||| || ||||||||||||    
T  8636002 ctgctgtatgaaaattccttgtttttagttgtactcttctcttcatcaaaagccttgtcctcgaaggaggagagcacttgccaaatcgtcattcaagatc 8636101  T
Q  318 ttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattgtagtatgca 416  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||||  || ||||||| ||||| || |||||||||||| || |||    
T  8636102 ttcattttcttcacttaatttaaaatttgcatacctatataaaataacgccaatattacgtaacagagccttagtaatgtacctaaaattgtattaagca 8636201  T
Q  417 agggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattcttccccat 495  Q
    ||||| | | ||||| |||||||||||||||||||| |||| || ||| |||  ||||||||  |||||||||| ||||    
T  8636202 agggttacagtatccccatcaatgtgaaaagagacgcacttctcttaagatatgggctcatcgccgaattcttcaccat 8636280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 8677197 - 8677344
Alignment:
Q  28 aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc 127  Q
    |||||||||||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||  | |  |||||||||||||||||||||||| ||    
T  8677197 aatgaaatagttgagcaataatcattgtctttttccaaacaat-gccaacaagataacaagtcaatccaatgcaaccatagatgataactactgaacgtc 8677295  T
Q  128 ttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagata 176  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8677296 ttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagata 8677344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 304 - 428
Target Start/End: Original strand, 8527857 - 8527982
Alignment:
Q  304 catcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaa 402  Q
    ||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||||| || | || ||||||||  | |||||    
T  8527857 catcattcaagatcttcatcttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaa 8527956  T
Q  403 aattgtagtatgcaagggtcagaata 428  Q
    ||||||| || ||| |||||||||||    
T  8527957 aattgtaataagcaggggtcagaata 8527982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 8640449 - 8640573
Alignment:
Q  305 atcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaa 403  Q
    ||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||  ||| ||| | || |||||||| |||||||||    
T  8640449 atcattcaagatcttcattttcttcacgcaatttaaattttgcacacctatataaaataacaccaatggtacgaaacaaagtctaagtaacgtgcctaaa 8640548  T
Q  404 attgtagtatgcaagggtcagaata 428  Q
    ||||||||| ||| |||||| ||||    
T  8640549 attgtagtaagcaggggtcaaaata 8640573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 495
Target Start/End: Original strand, 8677342 - 8677482
Alignment:
Q  356 ataaaataacaccaatattacaaaaaagagcctaagtaag-tgcctaaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgta 454  Q
    ||||||||||||||||||||||||| |||||| ||||||  | ||||||||||||||| | | || ||||||||| | |||||| |||||||||||||||    
T  8677342 ataaaataacaccaatattacaaaacagagcccaagtaacattcctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaagagacgta 8677441  T
Q  455 cttttcataatatacaggctcatcatcgaattcttccccat 495  Q
    |||||| | |||||  ||||| ||| | |||||||| ||||    
T  8677442 cttttcttcatatatgggctcgtcaccaaattcttcaccat 8677482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 9002262 - 9002354
Alignment:
Q  285 aggagggtacttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattaca 377  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||   |||||||| |||||||||||||| |||| |||||||||||||||    
T  9002262 aggagggtaatagtcaagtcgtcattcaagatcttcattttcttcacgcaatttaaactttgcacacctatacaaaacaacaccaatattaca 9002354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 295 - 394
Target Start/End: Complemental strand, 9075406 - 9075307
Alignment:
Q  295 ttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa 394  Q
    |||| ||| |||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||| || ||||||| || | || ||||||||    
T  9075406 ttgttaagacatcattcaagatcttcattctcttcatgcaatttaaaatttgcacacctatataaaataacaacagtattacacaacaaagtctaagtaa 9075307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 375
Target Start/End: Original strand, 8420392 - 8420485
Alignment:
Q  282 aggaggagggtacttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatatta 375  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||  |  |||  || |||||| |||||||||||||||||||| |||||    
T  8420392 aggaggaggatacttgtcaagtcatcattcaagatctttattttcttcgcacgattctaactttgcaaacctatataaaataacaccagtatta 8420485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 8545409 - 8545351
Alignment:
Q  131 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  8545409 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatttgtattttttttc 8545351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 428
Target Start/End: Original strand, 8534438 - 8534558
Alignment:
Q  311 caagatcttcattttcttcatataatttaaaa--tttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattg 407  Q
    |||||||||||||||||||||  || ||||||  |||| ||||||||||||||||||||||||||||||  |   || ||||||||  | ||||||||||    
T  8534438 caagatcttcattttcttcatgcaaattaaaaaatttgaacacctatataaaataacaccaatattacatgacgaagtctaagtaacatacctaaaattg 8534537  T
Q  408 tagtatgcaagggtcagaata 428  Q
    || || |||||||||||||||    
T  8534538 taataagcaagggtcagaata 8534558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 8640227 - 8640317
Alignment:
Q  121 gaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataattgtgatttagcat 215  Q
    |||||||| |||||||| ||||||||| |||||  ||||||||||||||||||||||||||   ||||  |||||| |||||| |||||||||||    
T  8640227 gaacatctgaattaaagcttacaaaaa-gacattgtttgcatcctaaaatgagatatgcat---tttttgaaatatcataattctgatttagcat 8640317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 8549148 - 8549071
Alignment:
Q  301 agtcatcattcaagatcttcattttcttcatataatttaaaa-tttgcacacctatataaaataacaccaatattaca 377  Q
    |||||||||||||||||||  ||||||| ||  ||||| ||| ||||||| |||||| ||||||||||||||||||||    
T  8549148 agtcatcattcaagatctttgttttctttatgcaattttaaactttgcacgcctatacaaaataacaccaatattaca 8549071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 8549230 - 8549193
Alignment:
Q  141 acaaaaaagacatcatttgcatcctaaaatgagatatg 178  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  8549230 acaaaaaagacatcatttgcatcctaaaaagagatatg 8549193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 8527663 - 8527719
Alignment:
Q  120 tgaacatcttaattaaagtttacaaaa-aagacatcatttgcatcctaaaatgagat 175  Q
    |||||||||  |||||| ||||||||| ||||||||||||||||| |||||||||||    
T  8527663 tgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagat 8527719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 9075576 - 9075532
Alignment:
Q  131 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagat 175  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||    
T  9075576 attaaagttaacaaaaaagccatcatttgcatcctaaaacgagat 9075532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 1601392 - 1601347
Alignment:
Q  120 tgaacatcttaattaaagtttacaaaaaagacatcatttgcatccta 166  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||||    
T  1601392 tgaacatctagattaaagtttacaaaaa-gacatcatttgcatccta 1601347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 27458114 - 27458082
Alignment:
Q  298 tcaagtcatcattcaagatcttcattttcttca 330  Q
    ||||||| |||||||||||||||||||||||||    
T  27458114 tcaagtcgtcattcaagatcttcattttcttca 27458082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 304 - 428
Target Start/End: Original strand, 9442024 - 9442149
Alignment:
Q  304 catcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaa 402  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || | || ||||||||  | |||||    
T  9442024 catcattcaagatcttcattttcttcatgtaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaa 9442123  T
Q  403 aattgtagtatgcaagggtcagaata 428  Q
    ||||||| || |||||||||||||||    
T  9442124 aattgtaataagcaagggtcagaata 9442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 48362933 - 48362758
Alignment:
Q  202 ttgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactcttcgtcaaaagcctctc-acagaaggaggagggtacttgtca 300  Q
    |||||||||| ||||||||| ||   |||||| ||| ||| |||| | |||| ||||||||  |||| ||||| | || | |||| || |||| ||||||    
T  48362933 ttgtgatttaacataaccctgcccagtgtatggaaattccctcttatcagttgtactcttcaccaaaggcctcaccaccggaggaagaaggtatttgtca 48362834  T
Q  301 agtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattaca 377  Q
    |  |||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||    
T  48362833 aaccatcattcgagatcttcattttcttcatgtaatttaatatttgcacacctatat-aaataacacgaatattaca 48362758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 200 - 377
Target Start/End: Original strand, 35777264 - 35777444
Alignment:
Q  200 aattgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactcttcgtcaaaagcctctc-acagaaggag-gagggtacttg 297  Q
    ||||||||||||||||| || | |||  |||||| ||| | |||| |  ||||| ||||||||| ||||||| || | || ||||||| |||| ||||||    
T  35777264 aattgtgatttagcatagccatgcctactgtatggaaattacttcataatagttgtactcttcgccaaaagcgtcaccaccgaaggagagaggatacttg 35777363  T
Q  298 tcaagtcatcattcaagatcttcattttcttcatataatttaaaa-tttgcacacctatataaaataacaccaatattaca 377  Q
    ||||||||||||||||||||||||||| |||  |  | ||||||| |||||||  ||||| ||||||||||||||||||||    
T  35777364 tcaagtcatcattcaagatcttcatttacttactgcagtttaaaactttgcacgactatacaaaataacaccaatattaca 35777444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 44438811 - 44438654
Alignment:
Q  45 ataatcattgtctttttctaaaccattgccaacaagataac-aagtcaatatagtaaaaccatagatgataactactgaacatcttaattaaa-gtttac 142  Q
    |||||||||| |||||||||||||| | ||| ||||||||| ||| || | | |||||||||| ||| || ||   ||||||| || |||||| |||||     
T  44438811 ataatcattgactttttctaaaccaat-ccatcaagataaccaagccagtctcgtaaaaccatggataatgaccgatgaacattttgattaaaagtttag 44438713  T
Q  143 aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataa 201  Q
    |||||||||||||||||| |||||||||||||| || |||| |||| ||||||| ||||    
T  44438712 aaaaaagacatcatttgcctcctaaaatgagatgtgtattttttttttaaatatcataa 44438654  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 44438558 - 44438492
Alignment:
Q  291 gtacttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatat 357  Q
    |||||||||||||||||||| | |||||||| ||| |||    ||||||||||||||| ||||||||    
T  44438558 gtacttgtcaagtcatcatttacgatcttcacttttttctcgcaatttaaaatttgcagacctatat 44438492  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 5129819 - 5129911
Alignment:
Q  337 ttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattgtagtatgcaagggtcagaata 428  Q
    |||||||||||||||||||||||||||| |||||||||||  || |  |||||| ||| ||||||||||||||| || ||| | |||||||||    
T  5129819 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaggcctaaataatgtgcctaaaattgtactaagcaggagtcagaata 5129911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 26325001 - 26324948
Alignment:
Q  310 tcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaata 363  Q
    ||||||||||||||||||||||  || || || |||||||||||||||||||||    
T  26325001 tcaagatcttcattttcttcatgcaaattcaattttgcacacctatataaaata 26324948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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