View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_5 (Length: 501)
Name: NF8448_low_5
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 155 - 485
Target Start/End: Original strand, 22363245 - 22363585
Alignment:
| Q |
155 |
ctaaattgagtcacacaaaaatgcatattaactcttcatactttaggcgtagttccttgtattctctagttctat----------------------taa |
232 |
Q |
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| T |
22363245 |
ctaaattgagtcacacaaaaatgcatattaactcttcatactttaggcctagttccttgtattctctagttctatgaagaacagagactcctcggattaa |
22363344 |
T |
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| Q |
233 |
gtgtgtccaggcaccgacacaacaccaacacttgtaatttaattacaagtaatgtaattttctcaaattagttgtgtcggtttgtcgtgtcagtgtt-ca |
331 |
Q |
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| T |
22363345 |
gtgtgtccaggcaccgacacaacaccaacactt----------------taatgtaattttctcaaattagttgtgtcggcttgttgtgtcagtgtttca |
22363428 |
T |
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| Q |
332 |
tg----tgattaactaatataaacaaagagaggaaaagcatagttatgaaagatagtaatataaatacctctacggacaaatatgatcaaattggagtcg |
427 |
Q |
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| T |
22363429 |
taggcatgattaactaatataaacaaagagaggaaaagcttagttatgaaagatagtaatctaa-tacctctacggacaaatatgatcaaattggagtca |
22363527 |
T |
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| Q |
428 |
agatactgaggaatgaacaaggatcttggttccatattaagcaaaccaatgtgcatgt |
485 |
Q |
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| T |
22363528 |
agatactgaggaatggaacaggatcttggttccatattaagcaaaccaatgtgcatgt |
22363585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 22363073 - 22363228
Alignment:
| Q |
15 |
atgaatcccaactttgctacccctgcatccaagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagc |
114 |
Q |
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| T |
22363073 |
atgaatcccaactttgctacccctgcatccaagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagc |
22363172 |
T |
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| Q |
115 |
tttaaaattgtgatgttaaattttgagaagaaaaaatatactaaattgagtcacac |
170 |
Q |
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| T |
22363173 |
tttaaaattgtgatgttaaattttgagaagtaaaaaaatactaaattgagtcacac |
22363228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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