View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_6 (Length: 470)
Name: NF8448_low_6
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 44325437 - 44325888
Alignment:
| Q |
1 |
ggagcagaagaaatgacgagacaggaggaccctattttgtcgccattaagaaattaaggaggaagtggctaatttgattnnnnnnnncaggaacagctat |
100 |
Q |
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| T |
44325437 |
ggagcagaagaaatgacgagacaggaggaccctattttgtcgccattaagaaattaaggaggaagtggctaatttgattaaaaaaacagggaacagctat |
44325536 |
T |
|
| Q |
101 |
aacctgagaacaaaaaataactatttacgagtgaaatgacaaaaaagtccaaataagacagttttgtggcagtttcactgtggcagccactacaacagtt |
200 |
Q |
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| T |
44325537 |
aacctgagaacaaaaaataactatttacgagtgaaatgacaaaaaagtccaaataagacagttttgtggcagtttcactgtggcagccactacaacagtt |
44325636 |
T |
|
| Q |
201 |
attttgtcgctatgtgattgctattagtggcgctgcacccgctactcataaccacaatgaaatgggattttgtgcagtgcctaggggtcgctgcgctaaa |
300 |
Q |
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| T |
44325637 |
attttgtcgctatgtgattgctattagtggcgctgcacccgctattcataaccacaatgaaatgggattttgtgtagtgcctaggggtcgctgcgctaaa |
44325736 |
T |
|
| Q |
301 |
cctattgacggctgagagtaatagagggtaacctctgattgtaaggagacatatcctttaatctatgtctatccaatctatattttagttcctatcaagg |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44325737 |
cctattgactgctgagagtaatagagggtaacctctgattgtaaggagacatatccattaatctatgtctatccaatctatattttagttcctatcaagg |
44325836 |
T |
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| Q |
401 |
aagcatgaagtcatttgaaagatagttggagcctttgggtgagggggatgca |
452 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44325837 |
aagcatgtagtcatttgaaagatagttggagcctttgggtgagggagatgca |
44325888 |
T |
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