View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_7 (Length: 460)
Name: NF8448_low_7
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 108 - 447
Target Start/End: Original strand, 33166486 - 33166824
Alignment:
| Q |
108 |
aactctaacatgaaacattcatgtgtatattgagtatagattgaatatgcatctcccatgacatcactataagctaccacnnnnnnncttcttggatagg |
207 |
Q |
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| T |
33166486 |
aactctaacatgaaacattcatgtgtatattgagtatagatt-aatatgcatctcccatgacatcactctaagctaccactttttttcttcttggatagg |
33166584 |
T |
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| Q |
208 |
cttgcttgtagcaccctccaaattttttaattatggaattcaccttcgaccatcgagattttagttgtactgggccctttgcaaagaaatgaccacaatg |
307 |
Q |
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| T |
33166585 |
cttgcttgtagcaccctccaaattttttaattatggaattcaccttcgaccatcgagattttagttgtactggtccctttgcaaggaaataaccacaatg |
33166684 |
T |
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| Q |
308 |
ttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccccgtacaactgcatccttagaaatatttagccatgattggatg |
407 |
Q |
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| T |
33166685 |
ttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccctgtacaactgcatccttagaaatatttagccatgattggatg |
33166784 |
T |
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| Q |
408 |
aggattttatcttcctctggggtgaaccttactctctgct |
447 |
Q |
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| T |
33166785 |
aggagtttatcttcctctggggtgaaccttactctttgct |
33166824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 33161433 - 33161524
Alignment:
| Q |
22 |
cagaagccgaagtctttgttcttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccacgcaaactct |
113 |
Q |
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| T |
33161433 |
cagaagccgaagtctttgttcttttactagctccttcaagtgattggtttgactatttaggttcatcttttaacaatctccacacaaactct |
33161524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 438
Target Start/End: Original strand, 49281300 - 49281426
Alignment:
| Q |
305 |
atgttcattataaccatctgcaattcttttgccaaaaaacatttgctctttgatttacccccgtacaactgcatccttagaaatatttagccatgattgg |
404 |
Q |
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| T |
49281300 |
atgttcattataaccatttgtaattattt-gctaaagagcatttgctctttgaattacccc--tacaaatgcatccgtagaaatatttagccatg--tg- |
49281393 |
T |
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| Q |
405 |
atgaggattttatcttcctctggggtgaacctta |
438 |
Q |
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| T |
49281394 |
-tgaggagtttatcttcctctcggatgaacctta |
49281426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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