View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8448_low_8 (Length: 441)

Name: NF8448_low_8
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8448_low_8
NF8448_low_8
[»] chr1 (4 HSPs)
chr1 (143-399)||(15593484-15593740)
chr1 (79-135)||(15593324-15593380)
chr1 (15-58)||(15593256-15593299)
chr1 (246-323)||(861889-861966)
[»] chr7 (3 HSPs)
chr7 (285-327)||(42720925-42720967)
chr7 (273-316)||(9483377-9483420)
chr7 (258-320)||(31924415-31924477)
[»] chr8 (2 HSPs)
chr8 (262-322)||(32145224-32145284)
chr8 (283-327)||(25831682-25831726)
[»] chr4 (2 HSPs)
chr4 (285-323)||(5096131-5096169)
chr4 (259-324)||(43093534-43093599)
[»] chr2 (1 HSPs)
chr2 (285-323)||(12940970-12941008)
[»] chr3 (3 HSPs)
chr3 (247-316)||(26656716-26656785)
chr3 (237-318)||(51733135-51733216)
chr3 (237-301)||(49636813-49636877)
[»] chr6 (1 HSPs)
chr6 (251-327)||(10038445-10038520)
[»] chr5 (1 HSPs)
chr5 (257-309)||(9895147-9895199)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 143 - 399
Target Start/End: Original strand, 15593484 - 15593740
Alignment:
Q  143 tgctagtatattgggatttacaggctttgtagttgcttgaattggaaacttatagtctgccgcattgataggaaagttgattaatcaagacctatgtagc 242  Q
    ||||||||  |||| ||||||||||||||||||| |||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  15593484 tgctagtaagttggaatttacaggctttgtagttacttgaattggaa-cttatagtctcccacattgataggaaagttgatgaatcaagacctatgtagc 15593582  T
Q  243 actgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtcatgtaggtgttcaagttca 342  Q
    ||||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |  |||| |||||    
T  15593583 actgacacgacacaaacgcatgtgactatgttcgattaatctattttttcaaattattagtggtgtcaatgtgtcaatgtcatgtaagcattcacgttca 15593682  T
Q  343 agctttatagagcaaaaccagtcctgttacat-gtactctattcaaaagttcatcatg 399  Q
    ||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||    
T  15593683 agctttatagatcaaaaccagtcctattacatagtactgtattcaaaagttcatcatg 15593740  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 15593324 - 15593380
Alignment:
Q  79 ccctaatagaggaaaccaggatgagtgatggcaagtgacaacacttcattcttgctc 135  Q
    |||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  15593324 ccctgatagaggaaaccacggtgagtgattgcaagtgacaacacttcattcttgctc 15593380  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 15593256 - 15593299
Alignment:
Q  15 atgaagtggaatggaactgatgaggatggtgtggtggcttgttc 58  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  15593256 atgaagtggaatggaactaacgaggatggtgtggtggcttgttc 15593299  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 861889 - 861966
Alignment:
Q  246 gacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtc 323  Q
    |||||||| | | |||| |||||||| ||||||| |   ||||||||||||||||| | ||||||||||||| |||||    
T  861889 gacacgaccccatcacacgtgactactttcaattttgtcattttttcaaattattactagtgtcaacgtgtctatgtc 861966  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 42720925 - 42720967
Alignment:
Q  285 attttttcaaattattagtggtgtcaacgtgtcaatgtcatgt 327  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  42720925 attttttcaaattattagcggtgtcaacgtgtcagtgtcatgt 42720967  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 9483420 - 9483377
Alignment:
Q  273 ttcaattattctattttttcaaattattagtggtgtcaacgtgt 316  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  9483420 ttcaattattctattttctcaaattattattggtgtcaatgtgt 9483377  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 31924477 - 31924415
Alignment:
Q  258 acacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaat 320  Q
    |||||||||| ||  ||||||| ||||||||| | |||||||||  |||||||||||||||||    
T  31924477 acacatgtgattatattcaattgttctattttcttaaattattatcggtgtcaacgtgtcaat 31924415  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 32145284 - 32145224
Alignment:
Q  262 atgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgt 322  Q
    |||||| |||||| |||||||| ||||| ||||||||||| |||||| || ||||||||||    
T  32145284 atgtgattacgtttaattattccattttctcaaattattactggtgttaaagtgtcaatgt 32145224  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 25831682 - 25831726
Alignment:
Q  283 ctattttttcaaattattagtggtgtcaacgtgtcaatgtcatgt 327  Q
    ||||||| | ||||||||||||||||| |||||||||||| ||||    
T  25831682 ctattttcttaaattattagtggtgtctacgtgtcaatgttatgt 25831726  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 5096131 - 5096169
Alignment:
Q  285 attttttcaaattattagtggtgtcaacgtgtcaatgtc 323  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  5096131 attttttcaaattattagcggtgtcgacgtgtcaatgtc 5096169  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 43093534 - 43093599
Alignment:
Q  259 cacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtca 324  Q
    ||||||||| ||| ||||||||| | |||||||||||||||||  |||||  |||||||| |||||    
T  43093534 cacatgtgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagtgtca 43093599  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 12940970 - 12941008
Alignment:
Q  285 attttttcaaattattagtggtgtcaacgtgtcaatgtc 323  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  12940970 attttttcaaattattagttgtgtcaacgtgtcagtgtc 12941008  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 26656716 - 26656785
Alignment:
Q  247 acacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgt 316  Q
    |||| |||||||||||||||  ||| || ||||||| ||||||| ||||||| || || |||||||||||    
T  26656716 acacaacacaaacacatgtggttacattgaattattttatttttccaaattactactgttgtcaacgtgt 26656785  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 51733216 - 51733135
Alignment:
Q  237 tgtagcactgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtca 318  Q
    |||||||| ||||| ||||  |||||| ||   |||||||||||||||||||| |||| ||||||  ||||||||| |||||    
T  51733216 tgtagcaccgacacaacaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgtcaacctgtca 51733135  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 49636813 - 49636877
Alignment:
Q  237 tgtagcactgacacgacacaaacacatgtgactacgttcaattattctattttttcaaattatta 301  Q
    ||||||||||||||||||| | | ||||||| ||| |||||||| |  ||||| |||||||||||    
T  49636813 tgtagcactgacacgacaccagcgcatgtgattacattcaattaattcattttctcaaattatta 49636877  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 10038445 - 10038520
Alignment:
Q  251 gacacaaacacatgtgactacgttcaattattctattttttcaaattattagtggtgtcaacgtgtcaatgtcatgt 327  Q
    ||||| ||||||||||| ||  ||||||||||||||||| || |  |||||  ||||| ||||||||||||||||||    
T  10038445 gacaccaacacatgtgattatattcaattattctattttctc-aggtattaccggtgttaacgtgtcaatgtcatgt 10038520  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 9895199 - 9895147
Alignment:
Q  257 aacacatgtgactacgttcaattattctattttttcaaattattagtggtgtc 309  Q
    ||||||||||| ||||||||| || | |||||| ||||||||||| |||||||    
T  9895199 aacacatgtgattacgttcaaataatttattttctcaaattattactggtgtc 9895147  T

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