View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_high_1 (Length: 560)
Name: NF8449_high_1
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 541
Target Start/End: Complemental strand, 21056191 - 21055670
Alignment:
| Q |
16 |
ggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaacttat |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
21056191 |
ggacatcaactttttctatatctaatctactttacaataagcatgccattgtcaagttaaactcaaacactccaatgcaacttccagtaagtaaacttat |
21056092 |
T |
|
| Q |
116 |
ccgcaactccaaaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21056091 |
ccgcaactccaaaaatagaggtatacaatgcatcactggagcacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaac |
21055992 |
T |
|
| Q |
216 |
caaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaagaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055991 |
caaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaagaa |
21055892 |
T |
|
| Q |
316 |
ataaaccagatacatnnnnnnncacccaatattgtgggactcctactctcacaggtctcagatacataatcagaaattgcaacatcaattcagaatgaga |
415 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
21055891 |
ataaaccagatgcat----aaacacccaatattgtgggactcctactctcacaggtctcagatgcataatcagcaattgcaacatcaattcagaatgaga |
21055796 |
T |
|
| Q |
416 |
gtccaaagtattttctgaattttaaaaatttcagtgacacctttaactagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttca |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055795 |
gtccaaagtattttctgaattttaaaaatttcagtgacacctttaaccagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttca |
21055696 |
T |
|
| Q |
516 |
attctttactgtgagtagtaaaatgc |
541 |
Q |
| |
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|| ||||||||||||||||||||||| |
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|
| T |
21055695 |
atgctttactgtgagtagtaaaatgc |
21055670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 26365759 - 26366064
Alignment:
| Q |
15 |
tggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaactta |
114 |
Q |
| |
|
|||| ||||||||||||||||| |||| | ||| ||||| |||||||||| |||| |||||| ||||||||| ||| |||| || ||||||||||| |
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| T |
26365759 |
tggatatcaactttttctatattcaatcaaatttcctataggcatgccattttcaaattaaacccaaacactc---tgcagcttccaataagtaaacttg |
26365855 |
T |
|
| Q |
115 |
tccgcaactccaaaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaa |
214 |
Q |
| |
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|| |||| ||||||| ||||||||||||||||||||| | | |||||||| |||| | ||||| ||| |||||||||| |||||||||| |||||| |
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| T |
26365856 |
tcaacaac-ccaaaaa-agaggtatacaatgcatcact--actgcattgttgattcataatccaaagcatcgacttatcaatgaacaaattattacacaa |
26365951 |
T |
|
| Q |
215 |
ccaaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaaga |
314 |
Q |
| |
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| |||||| |||||||| |||| ||| ||||||||||||||||| |||||| ||||||| ||||| ||||||||||| ||| | ||||||||||||| |
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| T |
26365952 |
ctaaataacatcattcaaatagataaaccagaaatggggtaaatgccagtaaagatcatattgtgccagcataaaaaatcagacacataaagcagcaagg |
26366051 |
T |
|
| Q |
315 |
aataaaccagata |
327 |
Q |
| |
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| ||||||||||| |
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|
| T |
26366052 |
actaaaccagata |
26366064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 324
Target Start/End: Original strand, 26363267 - 26363573
Alignment:
| Q |
15 |
tggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcag-taagtaaactt |
113 |
Q |
| |
|
||||||||||||||||| |||| |||| | ||| |||||||||||||||| ||||||||||| || |||||| ||| |||| | ||||||||||| |
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|
| T |
26363267 |
tggacatcaactttttcaatattaaatcaaatttcctataagcatgccattctcaagttaaacacagacactc---tgcagctttcccataagtaaactt |
26363363 |
T |
|
| Q |
114 |
atccgcaactccaaaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacaca |
213 |
Q |
| |
|
|| |||| ||| ||| |||| ||| |||||| |||| | | ||||||||||||||| ||||| | ||| |||||||||| |||||||||| ||||| |
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| T |
26363364 |
gtcaacaac-ccacaaa-agagatatgcaatgcttcacactactgcattgttgtttcacaatccaaagaagttacttatcaaagaacaaattattacaca |
26363461 |
T |
|
| Q |
214 |
accaaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcat-aaaaaattagatatataaagcagcaa |
312 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||| |||||||| |||| ||||||| ||| | ||||||||||| |
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| T |
26363462 |
accaaataatatcattcaaatagataaaccagaaatggggtaaatgccagtaaagatcgcatagtgccagcataaaaaaatcagacacataaagcagcag |
26363561 |
T |
|
| Q |
313 |
gaaataaaccag |
324 |
Q |
| |
|
||| |||||||| |
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|
| T |
26363562 |
gaactaaaccag |
26363573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 26363614 - 26363685
Alignment:
| Q |
470 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgc |
541 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
26363614 |
aatctctattcatgtgataattccaccttttttggtggatttttcaattctttattgtgagtagtaaaatgc |
26363685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 470 - 541
Target Start/End: Original strand, 26366169 - 26366240
Alignment:
| Q |
470 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgc |
541 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||| || ||||||||||||| ||||||||||||||||| |
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|
| T |
26366169 |
aatctccatgcatgtgataattccactctttttggtggatatttcaattctttattgtgagtagtaaaatgc |
26366240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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