View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_high_12 (Length: 374)
Name: NF8449_high_12
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 22936563 - 22936212
Alignment:
| Q |
18 |
gattacgggttgcaacaacaacaataagaacaacaatgatgctaaggttaagggtgtttttcgaatgaaaatggaaaatcgttgttgtagaattcaacat |
117 |
Q |
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| T |
22936563 |
gattacgggttgcaacaacaacaataacaacaacaatgatgctaaggttaagggtgtttttcgaatgaaaatggaaaatcgttgttgtagaattcaacat |
22936464 |
T |
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| Q |
118 |
agtgagttgtacaaaataaacctttgtatctttgataaagacgagaaaaagaagaatcattttggtcatgttttgaagagcaatagaatgggtgttattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22936463 |
agtgagttgtacaaaataaacctttgtatctttgataaagacgagaaaaagaagaatcattttggtcatgttttgaagagcaatagaatgggtgttattc |
22936364 |
T |
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| Q |
218 |
ggtttcataatcattctccggtggtagcagtggcttcttgcggtgtaggtgaggtggcggcgaagaataatagtgttttccggttggcaccgccgacaac |
317 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22936363 |
ggtttcataatcattctccggtgctagcaatggcttcttgcggtgtaggtgaggtggcggcgaagaataatagtgttttccggttggcaccgccgacaac |
22936264 |
T |
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| Q |
318 |
ggttggtggggtagggctatcacaaaggtatgcaaatgtgattcttctcact |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22936263 |
ggttggtggggtagggctatcacaaaggtatgcaaatgtgattcttttcact |
22936212 |
T |
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