View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_high_19 (Length: 240)
Name: NF8449_high_19
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40489150 - 40488927
Alignment:
| Q |
1 |
ttattatccttttgctttttgcgactcttctctgataatttcccatagctgccactgccactactttcttctggatcatgcaatctattattgcttccca |
100 |
Q |
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| T |
40489150 |
ttattatccttttgctttttgcgactcttctctgataatttgccatagctgccactgccactactttcttctggatcatgcaatctattattgcttccca |
40489051 |
T |
|
| Q |
101 |
atacccgtttacacttcttcacaaaatccatctctttaaacccacgacaattaagcaagatatataaatatctatctagtcgtagcgggagagctagaga |
200 |
Q |
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| T |
40489050 |
atacccgtttacacttcttcacaaaatccatctctttaaacccacgacaattaagcaagatatataaatatctatctagtcgtagcgggagagctagaga |
40488951 |
T |
|
| Q |
201 |
ttagaaatgaaggtgttgattaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40488950 |
ttagaaatgaaggtgttgattaat |
40488927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 40466170 - 40466017
Alignment:
| Q |
5 |
tatccttttgctttttgcgactcttctctgataatttcccatagctgccactgccactactttcttctggatcatgcaatctattattgcttcccaatac |
104 |
Q |
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|||||||||| |||||| |||||| | || ||||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||| |||| |
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| T |
40466170 |
tatccttttgttttttgtgactctcttttggtaatttcccatagctgccactgccact---ttcttctggaa-at--aatctattgttgcttccccatac |
40466077 |
T |
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| Q |
105 |
ccgtttacacttcttcacaaaatccatctctttaaacccacgacaattaagcaagatata |
164 |
Q |
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| T |
40466076 |
cctcttacacttcttcacataatccatctcttttatcctacgacaattaagcaagatata |
40466017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 40472503 - 40472374
Alignment:
| Q |
5 |
tatccttttgctttttgcgactcttctctgataatttcccatagctgccactgccactactttcttctggatcatgcaatctattattgcttcccaatac |
104 |
Q |
| |
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||||||||| ||||||| | | |||||||||||| || ||||| || ||||| ||||| ||||||||||| || ||||| || ||||||||| |||| |
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| T |
40472503 |
tatcctttttctttttggggcacttctctgataacttgccatatctaccactaccact---ttcttctggat-at--aatctcttgttgcttccccatac |
40472410 |
T |
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| Q |
105 |
ccgtttacacttcttcacaaaatccatctctttaaa |
140 |
Q |
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|| ||||||||||||| ||||||||||||| |||| |
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| T |
40472409 |
cctcttacacttcttcaaaaaatccatctctataaa |
40472374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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