View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_high_2 (Length: 527)
Name: NF8449_high_2
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 217 - 515
Target Start/End: Complemental strand, 7461333 - 7461031
Alignment:
| Q |
217 |
gtatctagttgcaataataaattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnn |
312 |
Q |
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| T |
7461333 |
gtatctagttgcaataataaattaaataagaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgatttttt |
7461234 |
T |
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| Q |
313 |
nnaagacttaagtacccttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
412 |
Q |
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| T |
7461233 |
ttaagactgaagtactcttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
7461134 |
T |
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| Q |
413 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
512 |
Q |
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| T |
7461133 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
7461034 |
T |
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| Q |
513 |
cat |
515 |
Q |
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| T |
7461033 |
cat |
7461031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 236 - 515
Target Start/End: Complemental strand, 7446370 - 7446087
Alignment:
| Q |
236 |
aattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnnnnaagacttaagtaccctt |
331 |
Q |
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| T |
7446370 |
aattaaataagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactctt |
7446271 |
T |
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| Q |
332 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
431 |
Q |
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| T |
7446270 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
7446171 |
T |
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| Q |
432 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
515 |
Q |
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| T |
7446170 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
7446087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 7461523 - 7461391
Alignment:
| Q |
19 |
gcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatatagtaatataatattgttggagaaatgatgattg |
118 |
Q |
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| T |
7461523 |
gcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatata--------atattgttggagaaatgatgattg |
7461432 |
T |
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| Q |
119 |
gaaattaaaattttcatgtcaaattataattcaatccactg |
159 |
Q |
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| T |
7461431 |
gaaattaaaattttgatgtcaaattataattcaatccactg |
7461391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 7446535 - 7446468
Alignment:
| Q |
19 |
gcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatata |
86 |
Q |
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| T |
7446535 |
gcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatata |
7446468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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