View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_high_21 (Length: 236)
Name: NF8449_high_21
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45390217 - 45389999
Alignment:
| Q |
1 |
tattaatttcggttggtgtgcatgccgctgggtccttcttgcagtggttccagtgcccatggggatcagctgaaggtggcaccaatatattatggaactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390217 |
tattaatttcggttggtgtgcatgccgctgggtccttcttgcaatggttccagtgcccgtggggatcagctgaaggtggcaccaatatattatggaactg |
45390118 |
T |
|
| Q |
101 |
ttgacattttaagtttattaatttcataattcaccaactatgagtttaatataatgtacatcatagaaagttaagaacaaaatgcatctcagaaactatt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390117 |
ttgacattttaagtttattaatttcataatttaccaacaatgactttaatataatgtacatcatagaaagttaagaacaaaatgcatctcagaaactatt |
45390018 |
T |
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| Q |
201 |
acttggaatacatcatagg |
219 |
Q |
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||||||||||||||||||| |
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| T |
45390017 |
acttggaatacatcatagg |
45389999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45375059 - 45374841
Alignment:
| Q |
1 |
tattaatttcggttggtgtgcatgccgctgggtccttcttgcagtggttccagtgcccatggggatcagctgaaggtggcaccaatatattatggaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
45375059 |
tattaatttcggttggtgtgcatgccgctgggtccttcttgcagtggatccagtgcccgcggggatcagttgaaggtggcaccaatatattatggaactg |
45374960 |
T |
|
| Q |
101 |
ttgacattttaagtttattaatttcataattcaccaactatgagtttaatataatgtacatcatagaaagttaagaacaaaatgcatctcagaaactatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45374959 |
ttgacattttaagtttattaatttcataattcaccaattgtgagtttaatataatgtacatcatagaaagttaagaacaaaatgcatctcagaaaccatt |
45374860 |
T |
|
| Q |
201 |
acttggaatacatcatagg |
219 |
Q |
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||||||||||||||||||| |
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| T |
45374859 |
acttggaatacatcatagg |
45374841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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