View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_high_24 (Length: 227)
Name: NF8449_high_24
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_high_24 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11010 - 10784
Alignment:
| Q |
1 |
taagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaaacagatatcacatcattgaaatattgaattctcac |
100 |
Q |
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| T |
11010 |
taagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaaacagatatcacatcattgaaatattgaattctcac |
10911 |
T |
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| Q |
101 |
agttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgtacaatagacgcgatgctatttatgttgatcccaacatggttgtga |
200 |
Q |
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| T |
10910 |
agttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgtacaatagacgcgatgctatttatgttgattccaacatggttgtga |
10811 |
T |
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| Q |
201 |
ggaccgtcttttgttgaactttgtcgt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
10810 |
ggaccgtcttttgttgaactttgtcgt |
10784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 19732 - 19937
Alignment:
| Q |
1 |
taagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaa-acagatatcacatcattgaaatattgaattctca |
99 |
Q |
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| T |
19732 |
taagaggtggagataccaaaagggtctccataaaatcatttgagtttttactcattgaaccaaaaaacagatattatatcattggaatattgaattctca |
19831 |
T |
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| Q |
100 |
cagttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgt-acaatagacgcgatgctatttatgttgatcccaacatggttgt |
198 |
Q |
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| T |
19832 |
cagttacatctaaaccagatgaaatattgattttagtgttctccaatgatgcttgtgtcaat-gaagagatgctatttatgttgattccaacatggttgt |
19930 |
T |
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| Q |
199 |
gaggacc |
205 |
Q |
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| T |
19931 |
caggacc |
19937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 36688 - 36537
Alignment:
| Q |
1 |
taagaggtggagataccaaaatggtctccatagaatctagtaaatagtcacccattgaagcaaaaacagatatcacatcattgaaatattgaattctcac |
100 |
Q |
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||||||||||||||||||||| ||| ||||||||||| | ||| || ||||||| ||||||||||||| | ||||||| ||||||||||||||| |
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| T |
36688 |
taagaggtggagataccaaaagggtttccatagaatcatttgaatt---actcattgaaccaaaaacagatattatatcattggaatattgaattctcat |
36592 |
T |
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| Q |
101 |
agttacatgtataccagatgaaagattaaccttagtgttatccaacgatgcttgt |
155 |
Q |
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| T |
36591 |
agttacatctaaaccagatgaaagattgaccttagtgttttccaatgatgcttgt |
36537 |
T |
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