View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_high_28 (Length: 215)
Name: NF8449_high_28
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 49653486 - 49653305
Alignment:
| Q |
18 |
attgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaact |
117 |
Q |
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| T |
49653486 |
attgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaact |
49653387 |
T |
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| Q |
118 |
tgaaatcaaaatgaaagtgagatgaggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
199 |
Q |
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| T |
49653386 |
tgaaatcaaaatgaaagtgagaagaggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
49653305 |
T |
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