View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8449_low_10 (Length: 402)

Name: NF8449_low_10
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8449_low_10
NF8449_low_10
[»] chr5 (10 HSPs)
chr5 (19-389)||(1744769-1745133)
chr5 (19-377)||(1739438-1739793)
chr5 (19-248)||(1725212-1725438)
chr5 (184-338)||(1744649-1744803)
chr5 (175-338)||(1739306-1739469)
chr5 (198-338)||(1724717-1724857)
chr5 (188-336)||(1724857-1725005)
chr5 (80-225)||(1715552-1715700)
chr5 (215-326)||(1760559-1760670)
chr5 (89-157)||(1760718-1760786)
[»] chr3 (5 HSPs)
chr3 (118-338)||(3167534-3167739)
chr3 (118-334)||(2023090-2023306)
chr3 (73-219)||(3156507-3156653)
chr3 (118-219)||(3138820-3138921)
chr3 (353-389)||(3156616-3156652)
[»] chr7 (3 HSPs)
chr7 (95-225)||(7490802-7490926)
chr7 (184-245)||(9011746-9011807)
chr7 (262-325)||(7484206-7484269)
[»] chr8 (1 HSPs)
chr8 (118-219)||(23852503-23852607)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 1745133 - 1744769
Alignment:
Q  19 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1745133 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 1745034  T
Q  119 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1745033 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 1744934  T
Q  219 aatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttgatatatctttcaaacataaagcaccat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1744933 aatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttaatatatctttcaaacataaagcaccat 1744834  T
Q  319 taccataccctaaagggccactaattctgctatgtgtaccatcttcaatccttgaagtaattgcaacacca 389  Q
    ||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1744833 taccat------aagggccactaattctgctatgtgtaccatcttcaatccttgaagtaattgcaccacca 1744769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 1739793 - 1739438
Alignment:
Q  19 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 118  Q
    ||||||||||||||||||| | ||| ||||| |||| |||||||| |||||||   ||||||||| ||||| ||||||||||||||||||||||||| ||    
T  1739793 aattggaggattcttcttccgagttaaacttagacagatcaatattatccttg---gtagtagtatgatcctcactatttttattgtttatgattgtact 1739697  T
Q  119 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 218  Q
    ||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  1739696 tgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatcctcgaagcagttgcaccacca 1739597  T
Q  219 aatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttgatatatctttcaaacataaagcaccat 318  Q
    ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  1739596 aatcctagaattccagccccactattactattgctaccctccatatttctcaaactaacaagcgaagggtttaatatatctttcaaacataaagcaccat 1739497  T
Q  319 taccataccctaaagggccactaattctgctatgtgtaccatcttcaatccttgaagta 377  Q
    |||||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||    
T  1739496 taccataccctaaatggcccctaattctgttatttgtaccatcttcaatccttgaagta 1739438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 1725438 - 1725212
Alignment:
Q  19 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 118  Q
    ||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||| |   |||||| |||||||||| |||||||||| | |    
T  1725438 aattggaggattcttcttcagctttgaacttcgacatatcaatatcatccttggtggtagtagca---tccacaatatttttattttttatgattgcgtt 1725342  T
Q  119 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 218  Q
    ||||||||| ||||||| | |||||||||||||  |||||  |||||||||||| || |||||  |  |||||||||||||||||| |||| ||||||||    
T  1725341 tgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttattatttgtgtcatcttcaatccttgaagtagttccaccacca 1725242  T
Q  219 aatcctaaaattccagtcccactattacta 248  Q
    |  |||| |||||||| |||| ||| ||||    
T  1725241 atacctagaattccagccccattataacta 1725212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 1744803 - 1744649
Alignment:
Q  184 taccatcttcaatccttgaagcagttgcaccaccaaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtga 283  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||||   ||||| ||||||||| |||| || | | ||||||||||||| ||| ||    
T  1744803 taccatcttcaatccttgaagtaattgcaccaccaaatcctagaattcctaccccacgattactattactactctccatgtttctcaaactaataagaga 1744704  T
Q  284 agggtttgatatatctttcaaacataaagcaccattaccataccctaaagggcca 338  Q
    ||| ||| |||||||||| |||   ||| ||||||||| |||| | |||||||||    
T  1744703 aggatttaatatatcttttaaatgaaaatcaccattactatactcaaaagggcca 1744649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 1739469 - 1739306
Alignment:
Q  175 tgttattcataccatcttcaatccttgaagcagttgcaccaccaaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaact 274  Q
    |||||||  ||||||||||||||||||||| ||||| |||||||||||||| ||||||   |||||  |||||||| |||| || | | ||||||||||     
T  1739469 tgttatttgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaacc 1739370  T
Q  275 aaaaagtgaagggtttgatatatctttcaaacataaagcaccattaccataccctaaagggcca 338  Q
    || ||| ||||| ||| ||||||||||||||   ||| ||||||||| |||| | |||||||||    
T  1739369 aacaagagaaggatttaatatatctttcaaatgcaaatcaccattactatactcaaaagggcca 1739306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 338
Target Start/End: Complemental strand, 1724857 - 1724717
Alignment:
Q  198 cttgaagcagttgcaccaccaaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttgatatat 297  Q
    ||||||| |||| |||||||||  |||| ||| |||   ||||||||| |||| ||||||| | ||||||||||||||| ||| ||||||||| | || |    
T  1724857 cttgaagtagttccaccaccaatacctagaatcccaactccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatct 1724758  T
Q  298 ctttcaaacataaagcaccattaccataccctaaagggcca 338  Q
    ||| |||||  ||||||||||||  |||||| |||||||||    
T  1724757 cttgcaaacccaaagcaccattattatacccaaaagggcca 1724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 336
Target Start/End: Complemental strand, 1725005 - 1724857
Alignment:
Q  188 atcttcaatccttgaagcagttgcaccaccaaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaaggg 287  Q
    |||||||||||||||||||||| |||||||||  |||| ||  |||   |||||| ||||||| ||||||| | ||||| ||||||||| ||  ||||||    
T  1725005 atcttcaatccttgaagcagttccaccaccaatacctagaaccccaactccactagtactattactaccctccatatttttcaaactaacaaaagaaggg 1724906  T
Q  288 tttgatatatctttcaaacataaagcaccattaccataccctaaagggc 336  Q
    ||| | || |||| |||||  |||| |||||||| |||||| |||||||    
T  1724905 tttaacatctcttgcaaacccaaagtaccattactatacccaaaagggc 1724857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 225
Target Start/End: Original strand, 1715552 - 1715700
Alignment:
Q  80 agtaggatccacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaa---gaatctccaaatttagtaatagcaccaatcttg 176  Q
    |||||||||||| ||||||||||| || |||||||   |||||||| | ||||| |||| ||||   ||||||||||||||  ||| | | ||||| |||    
T  1715552 agtaggatccacgctatttttatttttcatgattgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttg 1715651  T
Q  177 ttattcataccatcttcaatccttgaagcagttgcaccaccaaatccta 225  Q
    |||||  |||||||||||||| |||||  | ||||||| ||||||||||    
T  1715652 ttattggtaccatcttcaatctttgaaataattgcacccccaaatccta 1715700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 1760670 - 1760559
Alignment:
Q  215 accaaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttgatatatctttcaaacataaagca 314  Q
    ||||||||||||| || ||| ||||||||||||||| | |||||    |||||||| ||||| ||| ||||||||| |||| ||||||||||  ||| ||    
T  1760670 accaaatcctaaattttcagccccactattactattacaaccctcaaaatttctcagactaacaagagaagggtttaatatctctttcaaactcaaaaca 1760571  T
Q  315 ccattaccatac 326  Q
    ||||||| ||||    
T  1760570 ccattactatac 1760559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 1760786 - 1760718
Alignment:
Q  89 cacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaaattt 157  Q
    |||| |||||||||||| |||||||| | ||||||||||  ||| |||||||||||||| ||| |||||    
T  1760786 cacattatttttattgtgtatgattgagtttgaacttgtatcaatatttgtagaagaatatccgaattt 1760718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 118 - 338
Target Start/End: Complemental strand, 3167739 - 3167534
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacc 217  Q
    |||||||||| ||||||||||||||||||||||| |||||   |||||||||||| || |||||  |||||||||| |||||||||| | ||||||||||    
T  3167739 ttgaacttgtagcaacatttgtagaagaatctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagtacttgcaccacc 3167640  T
Q  218 aaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttgatatatctttcaaacataaagcacca 317  Q
    ||  || | |||||||  ||||  |               ||| ||||||||||||||| ||||||||||||| |||| |||| |||| |||||||||||    
T  3167639 aataccaagaattccaaccccatga---------------ttcttatttctcaaactaacaagtgaagggtttaatatctcttgcaaagataaagcacca 3167555  T
Q  318 ttaccataccctaaagggcca 338  Q
    ||| ||||||| |||||||||    
T  3167554 ttatcatacccaaaagggcca 3167534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 334
Target Start/End: Complemental strand, 2023306 - 2023090
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaa-tttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccac 216  Q
    |||||||||| | ||||||||||||||||||| |||| ||||| | ||| |||||| || |||||   |||||||||||||||| ||| ||||||| | |    
T  2023306 ttgaacttgttgtaacatttgtagaagaatcttcaaactttag-attagtaccaattttattattttcaccatcttcaatccttaaagtagttgcatccc 2023208  T
Q  217 caaatcctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttgatatatctttcaaacataaagcacc 316  Q
    |    |||| |||||||  || |  ||||||||| || |||| | ||||||||||||||| ||| ||||||||| |||| |||| |||||  ||| ||||    
T  2023207 cggtacctagaattccaaccctagaattactattactgccctccatatttctcaaactaacaagagaagggtttaatatctcttgcaaacccaaaccacc 2023108  T
Q  317 attaccataccctaaagg 334  Q
    |||||||||||| |||||    
T  2023107 attaccatacccaaaagg 2023090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 3156507 - 3156653
Alignment:
Q  73 tggtagtagtaggatccacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaat 172  Q
    |||||| ||||||| ||||| || |||  || | |||| ||| | |||||||||  ||||||||||||||||||||||| |||||   ||||||||| ||    
T  3156507 tggtagaagtaggagccacaataatttgcttttctatgtttgagtttgaacttgcagcaacatttgtagaagaatctcctaattttagaatagcacctat 3156606  T
Q  173 cttgttattcataccatcttcaatccttgaagcagttgcaccaccaa 219  Q
     || |||||  ||||||||||||||||||||| | ||||||||||||    
T  3156607 tttattatttgtaccatcttcaatccttgaagtacttgcaccaccaa 3156653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 3138820 - 3138921
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacc 217  Q
    ||||| |||| ||||| ||||||||||||||||| ||||    |||||||||||| || ||||   |||||| ||| ||| |||||| ||||||||||||    
T  3138820 ttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatatgtaccatattcgatctttgaagtagttgcaccacc 3138919  T
Q  218 aa 219  Q
    ||    
T  3138920 aa 3138921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 3156616 - 3156652
Alignment:
Q  353 tgtaccatcttcaatccttgaagtaattgcaacacca 389  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  3156616 tgtaccatcttcaatccttgaagtacttgcaccacca 3156652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 7490802 - 7490926
Alignment:
Q  95 atttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttca 194  Q
    |||||| |||||| || ||| |||||||||||| ||||      ||||||||||||||| |||   |||||||||||| || |||||  |||||||||||    
T  7490802 atttttcttgtttgtgtttgagcttgaacttgtagcaa------tagaagaatctccaagttttagaatagcaccaattttattatttgtaccatcttca 7490895  T
Q  195 atccttgaagcagttgcaccaccaaatccta 225  Q
    || ||||||| | |||| |||||||| ||||    
T  7490896 attcttgaagtacttgctccaccaaaaccta 7490926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 9011746 - 9011807
Alignment:
Q  184 taccatcttcaatccttgaagcagttgcaccaccaaatcctaaaattccagtcccactatta 245  Q
    |||||||||||||| |||||  ||||||||||||||| |||| |||||||| ||| ||||||    
T  9011746 taccatcttcaatctttgaactagttgcaccaccaaaccctagaattccagcccctctatta 9011807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 7484206 - 7484269
Alignment:
Q  262 tatttctcaaactaaaaagtgaagggtttgatatatctttcaaacataaagcaccattaccata 325  Q
    ||||||||||| ||||||||||||||| | ||| ||| |||||||  |||||||||| ||||||    
T  7484206 tatttctcaaattaaaaagtgaagggtgtaatacatcattcaaacgcaaagcaccataaccata 7484269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 23852607 - 23852503
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaa---tcttgttattcataccatcttcaatccttgaagcagttgcacc 214  Q
    |||||||||| |||| |||||||||||||||||| |||||   |||||||||||   | || |||||  |||||||||| || ||||||| |||||||||    
T  23852607 ttgaacttgtagcaatatttgtagaagaatctcccaattttaaaatagcaccaattttattattatttgtaccatcttcgattcttgaagtagttgcacc 23852508  T
Q  215 accaa 219  Q
     ||||    
T  23852507 gccaa 23852503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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