View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_12 (Length: 381)
Name: NF8449_low_12
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34637633 - 34637866
Alignment:
| Q |
1 |
tttaaatagtaaagtttgttt--aagatgattttttaatcattattattgtcaaaacgttttcataaacatctcttcatcgtcgattacatggttacatc |
98 |
Q |
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| T |
34637633 |
tttaaatagtaaagtttgttttcaagatgattttttaatcattattattgtcaaa-cgttttcataaacatctcttcatcgtcgatcgcatggttacatc |
34637731 |
T |
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| Q |
99 |
ttttatcatagtccatcattagcgtgtgttttgtgaatggaaaattgagacgatgaggaaaataatttaaatttgagttgtttggttcaattatttgaag |
198 |
Q |
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|||||||||||| |||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34637732 |
ttttatcatagttcatcattagcgtgtgtttgatcagtggaaaactgagacgatgaggaaaataatttaaatttgggttgtttggttcaattatttgaag |
34637831 |
T |
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| Q |
199 |
gaaatgagaagggagaagaatgatatctctcaaaa |
233 |
Q |
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| T |
34637832 |
gagatgaaaagggagaagagtgatatctctcaaaa |
34637866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 34637861 - 34637954
Alignment:
| Q |
270 |
tcaaatgttgtaaggtatatttctcggttagaaattagacctcaatttctttaatatttcaattcatggagcacaatatattttttaatgttag |
363 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34637861 |
tcaaaagttgtaaggtatatttctcggttagaaattagacctcaatttctttaatatttcaattcatggagcacaatatattttttaatgttag |
34637954 |
T |
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