View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_13 (Length: 381)
Name: NF8449_low_13
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 48171361 - 48171012
Alignment:
| Q |
16 |
ttcttctcaagcgcggtgacagtaggccatcacatgatggaaatggatattcctttggcctagtgagcagtgatagcgaggaaggatcacattttgatcg |
115 |
Q |
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| T |
48171361 |
ttcttctcaagcgcggtgacagtaggccatcacatgatggaaatggatattcctttggcctagtgagcagtgatagcgaggaaggatcacattttgatcg |
48171262 |
T |
|
| Q |
116 |
cacgagcacgagggggtctgaggagggaagctttcaccatttccaacattccagcagcagaaaatcagatgagggaagtgttcattcacgatagcttgca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171261 |
cacgagcacgagggggtctgaggagggaagctttcaccatttccaacattccagcagcagaaaatcagatgagggaagtgttcattcacgatagcttgca |
48171162 |
T |
|
| Q |
216 |
attgaacatgcattcatctatgcacgccgcactttgacacatctttgtatatttctgtcaaagtcttgtttatacatcaatcagtttggttgagcgagac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171161 |
attgaacatgcattcatctatgcacgccgcactttgacacatctttgtatatttctgtcaaagtcttgtttatacatcaatcagtttggttgagcgagac |
48171062 |
T |
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| Q |
316 |
aagtataacataaccgtatatatatcaaaatattataacacgaaactcga |
365 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
48171061 |
aagtataacataatcgtatatatatcaaaatattataacttgaaactcga |
48171012 |
T |
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