View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_14 (Length: 379)
Name: NF8449_low_14
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_14 |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 42734372 - 42734015
Alignment:
| Q |
1 |
cgcggtggtcgaacggtggatggtttcgttaacagtgttaagaagcttcagagacgcgaaattagctccaagcgtgatcgtgcttttagtatgaccgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42734372 |
cgcggtggtcgaacggtggatggtttcgttaacagtgttaagaagcttcagagacgcgaaattagctccaagcgtgatcgtgcttttagtatgaccgatg |
42734273 |
T |
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| Q |
101 |
cgcaagaacgattccgcaatattcgcttgcaggtgaaattaattttcgatttcgatttcaattttcgtgtttccatttcacgaagttgagtttgttaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42734272 |
cgcaagaacgattccgcaatattcgcttgcaggtgaaattaattttcgatttcgatttcaattttcgtgtttccatttcacgaggttgagtttgttaggt |
42734173 |
T |
|
| Q |
201 |
tagggttgagctgtagcgtgttaagttttctttatgttactcgtttttatcgtgattttgaagctatatgcctgtttggattacaattagccacttaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42734172 |
tagggttgagctgtagcgtgttaagttttctttatgttactcg-ttttatcgtgattttgaagctatatgcctgtttggat----attagccacttaatt |
42734078 |
T |
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| Q |
301 |
ttaatttgtagcttatagcttaaacccttatcctatataaaggcttattataacctgtttttg |
363 |
Q |
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| T |
42734077 |
ttaatttgtagcttatagcttaaacccttatcctatataaaggcttattataacctgtttttg |
42734015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 8405 - 8342
Alignment:
| Q |
4 |
ggtggtcgaacggtggatggtttcgttaacagtgttaagaagcttcagagacgcgaaattagct |
67 |
Q |
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| T |
8405 |
ggtggtagaaaggtggatgaatttattaacagcgttaagaagcttcagagacgcgaaattagct |
8342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 20972620 - 20972557
Alignment:
| Q |
4 |
ggtggtcgaacggtggatggtttcgttaacagtgttaagaagcttcagagacgcgaaattagct |
67 |
Q |
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|||||| |||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
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| T |
20972620 |
ggtggtagaacggtggatgaatttattaacaacgttaagaagcttcagagacgcgaaattagct |
20972557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 29030417 - 29030520
Alignment:
| Q |
31 |
aacagtgttaagaagcttcagagacgcgaaattagctccaagcgtgatcgtgcttttagtatgaccgatgcgcaagaacgattccgcaatattcgcttgc |
130 |
Q |
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|||||||||| ||||||||| ||||| |||||| |||| ||| ||||| |||||||| || ||||| |||||||||||||||||||| || |||| |
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| T |
29030417 |
aacagtgttaggaagcttcaaagacgtgaaatttctaccaaaagtgttcgtgggtttagtatcactgatgctcaagaacgattccgcaatatccgtttgc |
29030516 |
T |
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| Q |
131 |
aggt |
134 |
Q |
| |
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|||| |
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| T |
29030517 |
aggt |
29030520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 41406868 - 41406805
Alignment:
| Q |
4 |
ggtggtcgaacggtggatggtttcgttaacagtgttaagaagcttcagagacgcgaaattagct |
67 |
Q |
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|||||| ||| |||||||| || ||||||| ||||||||||||||||||||||||||||||| |
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| T |
41406868 |
ggtggtagaatggtggatgaatttattaacagcgttaagaagcttcagagacgcgaaattagct |
41406805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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