View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_17 (Length: 346)
Name: NF8449_low_17
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 43076732 - 43076410
Alignment:
| Q |
19 |
gtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076732 |
gtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgat |
43076633 |
T |
|
| Q |
119 |
ggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacatttggtccaagaagtaacggta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43076632 |
ggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacgtttggtccaagaagtaacggta |
43076533 |
T |
|
| Q |
219 |
ttagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076532 |
ttagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactcc |
43076433 |
T |
|
| Q |
319 |
ttcctctattcttctctgcttct |
341 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
43076432 |
ttcctctattcttctctgcttct |
43076410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 43086959 - 43086637
Alignment:
| Q |
19 |
gtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgat |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43086959 |
gtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgat |
43086860 |
T |
|
| Q |
119 |
ggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacatttggtccaagaagtaacggta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43086859 |
ggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacgtttggtccaagaagtaacggta |
43086760 |
T |
|
| Q |
219 |
ttagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43086759 |
ttagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactcc |
43086660 |
T |
|
| Q |
319 |
ttcctctattcttctctgcttct |
341 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
43086659 |
ttcctctattcttctctgcttct |
43086637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 43090630 - 43090308
Alignment:
| Q |
19 |
gtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090630 |
gtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgat |
43090531 |
T |
|
| Q |
119 |
ggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacatttggtccaagaagtaacggta |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43090530 |
ggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgcttttatcacgtttggtccaagaagtaacggta |
43090431 |
T |
|
| Q |
219 |
ttagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactcc |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43090430 |
ttagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactcc |
43090331 |
T |
|
| Q |
319 |
ttcctctattcttctctgcttct |
341 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
43090330 |
ttcctctattcttctctgcttct |
43090308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 25247401 - 25247347
Alignment:
| Q |
134 |
aaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgctt |
188 |
Q |
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||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||| |
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| T |
25247401 |
aaggttggtgcttttatttctggtcgttatcatatacatgttcgttgccctgctt |
25247347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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