View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_18 (Length: 337)
Name: NF8449_low_18
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 2288828 - 2289129
Alignment:
| Q |
17 |
gatatattgaaatttagagaggtttaaaagtgggtgcatgaaggcaaaatgtataaagaaaatgggaaccaaccaagagatatagggagaaagcgaatgc |
116 |
Q |
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| T |
2288828 |
gatatattgaaatttagagaggtttaaaagtgggtgcatgaaggcaaaatgtataaagaaaatgggaaccaaccaagagatatagggagaaagcgaatgc |
2288927 |
T |
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| Q |
117 |
agaagaaaaataaaggaatgaagagggagtatatagctataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggatt |
216 |
Q |
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| T |
2288928 |
agaagaaaaataaaggaatgcagagggagcatata------ggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggatt |
2289021 |
T |
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| Q |
217 |
ttgttttcattctctctctcttgatatgttattctgaatcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgt |
316 |
Q |
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| T |
2289022 |
ttgttttcattctctctctcttgatatgttattctgaatcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgt |
2289121 |
T |
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| Q |
317 |
atgttgat |
324 |
Q |
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|||||||| |
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| T |
2289122 |
atgttgat |
2289129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 324
Target Start/End: Complemental strand, 2255686 - 2255391
Alignment:
| Q |
25 |
gaaatttagagaggtttaaaagtgggtgcatgaaggcaaaatgtataaagaaaatgggaaccaaccaagagatatagggagaaagcgaatgcagaagaaa |
124 |
Q |
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|||| ||||||||| ||||||| |||| ||||||| |||||||| || |||||||||||||| ||||| ||||||||||| | ||||||||||| || |
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| T |
2255686 |
gaaacttagagaggattaaaagcgggtagatgaaggaaaaatgtaaaacaaaaatgggaaccaaacaagatatatagggagagaacgaatgcagaacaag |
2255587 |
T |
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| Q |
125 |
aataaaggaatgaagagggagtatatagctataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggattttgttttc |
224 |
Q |
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| T |
2255586 |
aataaaggaaggcagagggagtatataga------caagtgtagtgccatggtctccccattgaaactaggtgaagaaggtaagttaggatttggttttc |
2255493 |
T |
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| Q |
225 |
attctctctctcttgatatgtt--attctgaatcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgtatgttg |
322 |
Q |
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||||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||| |
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| T |
2255492 |
attctctctcttgtgatatgttaaattctgaatcagttaaatttattccaattttcctgaattctcattttttatttttgaattttgtatgtgtatgttg |
2255393 |
T |
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