View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8449_low_2 (Length: 545)
Name: NF8449_low_2
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_2 |
 | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold1344 (1 HSPs) |
| | |
|
| [»] scaffold0854 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 5 - 534
Target Start/End: Complemental strand, 27369982 - 27369459
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27369982 |
gtacaattcttcaagtgatgtgcatctttggattacttcaaatgggtcattatttctaactttacaatttttcaactccaacaatctaaaattctccagt |
27369883 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
27369882 |
ttttcaatttcacgaggaagttcatcaattgtacatttagtcaactcaagagtctcaagactttgcaggcctccaaaaccagaaatgtcacccaaatcaa |
27369783 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaatattcgacaatggcttcgttgattgtggtaatgatagcggatgacggtcgcgataagaactatggcgtgataaatt |
304 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| | ||||||| |||||| ||||||||| |
|
|
| T |
27369782 |
cactttcaaatgatagagaacgaatattcgacaatggcttcattgattgtggtaacgatagaggatgatg------ataagaattatggcatgataaatt |
27369689 |
T |
|
| Q |
305 |
taaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaattagaatctcaagttcagaacca |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27369688 |
caaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcaaaatgtcctccatatgcatgttgccaattagaatctcaagttcagaacca |
27369589 |
T |
|
| Q |
405 |
tcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaaccagtgacttttgacttttgttggaaa |
504 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27369588 |
tcaaacttaaatgcaaataaatccctaagatctccttcacatatcaaatatttgattttcttatcgctttcaaccagtgacttttgacttttgttggaaa |
27369489 |
T |
|
| Q |
505 |
aatttactatcttaatctcattctctgcta |
534 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
27369488 |
aatttactatcttaatctcattctttgcta |
27369459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 526
Target Start/End: Original strand, 18723745 - 18724275
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
18723745 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaattttacattttttcaactccaacaatctaaaattctccagt |
18723844 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||||||| ||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
18723845 |
ttttcaatttcacgaggaagttcatcaattgcacaatgagtcaattcaagtgtctcaagaccttgcaggcctccaattgcagaaatgtcacccaaatcaa |
18723944 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaatattcgacaatggcttcgttgattgtggtaatgatagcggatg---------acggtcgcgataagaactatggcg |
295 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| | ||| |||||| | ||||||| |
|
|
| T |
18723945 |
atttttcaaatgatagagaacgtatattcgacaatggctttattgattgtggtaatgatagacgatgatggtaatcatggtactgataaggagtatggcg |
18724044 |
T |
|
| Q |
296 |
tgataaatttaaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaattagaatctcaagt |
395 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
18724045 |
tgataaattcaaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcacaatgtcctttatatgcatgttgccaattagaaactcaagt |
18724144 |
T |
|
| Q |
396 |
tcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaaccagtgacttttgacttt |
495 |
Q |
| |
|
| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||| ||| |
|
|
| T |
18724145 |
ttagaaccgtcaaacttagatgcaaataaatccctaagatttccttcgcatatcaaatatttgatattcttatccctttcaacctgtgacttttgatttt |
18724244 |
T |
|
| Q |
496 |
tgttggaaaaatttactatcttaatctcatt |
526 |
Q |
| |
|
||||||||||||||||||| || |||||||| |
|
|
| T |
18724245 |
tgttggaaaaatttactatgttcatctcatt |
18724275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 499
Target Start/End: Complemental strand, 27343684 - 27343196
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||| ||||||| |||| |
|
|
| T |
27343684 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaattttacacttttccaacttcaacaatctaaaattcttcagt |
27343585 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||| |
|
|
| T |
27343584 |
ttttcaatttcatgaggaagttcatcaatttcacaatgagtcaactcaagagtctcaagactttgcaggcctccaaaaacagaaatgtcactcaaaacaa |
27343485 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaatattcgacaatggcttcgttgattgtggtaatgatagcggatgacggtcgcgataagaactatggcgtgataaatt |
304 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | || |||||||| |||||| ||||||||| |
|
|
| T |
27343484 |
cttttgcaaatgatagagaacgaatattcgacaatggctccattgattgtggtaatgatagacaacga------ggataagaattatggcatgataaatt |
27343391 |
T |
|
| Q |
305 |
taaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaattagaatctcaagttcagaacca |
404 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||| || | || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27343390 |
caaaacacgaagccttggaatatttttaaagaatgaaatggggatctgcaaaaagcccgtcatatccatgtcgccaattagaatctcaagttcagaacca |
27343291 |
T |
|
| Q |
405 |
tcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaaccagtgacttttgacttttgtt |
499 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27343290 |
tcaaacttatttgcaaataaatctctaagatttccttcgcatatcaaatatttgattttcttatcgctttcaaccagtgacttttgacttttgtt |
27343196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 5 - 512
Target Start/End: Original strand, 18081616 - 18082123
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || || ||| ||||||||||||| |||| ||| | ||||| ||||| |||| |||| |
|
|
| T |
18081616 |
gtacaattcttcaagtgatgtgcatctttggataacttcaataggattgttacttctaatttcacatttttccaagttcaacagtctcagtttcttcagt |
18081715 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
|| | |||||||| |||||||| |||||| ||| | ||| ||||||||||| |||||||||| |||||| |||| ||| |||| |||||||| | |
|
|
| T |
18081716 |
ttctgaatttcacatggaagttcatcaatttgacagtgatccaattcaagagtctctagactttgcaggcttcccaaaatagagatgttacccaaataga |
18081815 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaatattcgacaatggcttcgttgattgtggtaatgatagcggatgacggtcgcgataagaactatggcgtgataaatt |
304 |
Q |
| |
|
|| || ||| | ||||||||||||||||| ||||| | ||||||||||||||||||| | | || || ||| | ||| | ||||||||| |
|
|
| T |
18081816 |
ctctttcaactaatagagaacgaatattcatcaatgaactaattgattgtggtaatgatagagttggccgctccagattaatacttttatttgataaatt |
18081915 |
T |
|
| Q |
305 |
taaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaattagaatctcaagttcagaacca |
404 |
Q |
| |
|
||||||||||||| || |||| || | ||||||||||||||||||| || | | || ||| | || || | ||||||||||||||||| ||| ||| |
|
|
| T |
18081916 |
caaaacacgaagccctgaaatacttcccaagaatgaaatggggatgtccacagtaccccacatgttcacgtggagaattagaatctcaagtttagaccca |
18082015 |
T |
|
| Q |
405 |
tcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaaccagtgacttttgacttttgttggaaa |
504 |
Q |
| |
|
| ||||| ||||| |||||||||||| ||||| |||||||||| ||||||||| || || ||||| |||||||||| ||||||||| ||||||| |||| |
|
|
| T |
18082016 |
taaaactcagatgaaaataaatcctttagattcccttcgcataacaaatatttgatattattatccctttcaaccaatgacttttggtttttgttcgaaa |
18082115 |
T |
|
| Q |
505 |
aatttact |
512 |
Q |
| |
|
||||||| |
|
|
| T |
18082116 |
gatttact |
18082123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 26184068 - 26184295
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||| | |||||| ||||||||| | |||| || |
|
|
| T |
26184068 |
gtacaattcttcaagtgatgggcaactctggataacttcaaatggattattgtttttaatttcacattctttcaagcacaacaatctaagtttcttcaac |
26184167 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
||| |||||||||| | || ||| |||||| ||||| | |||||||||||||||||||||||||| |||||| |||||||| ||||| |||||| | |
|
|
| T |
26184168 |
tttgcaatttcacgggaaaattcatcaatttcacaataatgcaactcaagagtctcaagactttgcaggcttcccaaaacagagatgtcgcccaaaatga |
26184267 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaatatt |
232 |
Q |
| |
|
| ||| ||| |||||||||||||||||| |
|
|
| T |
26184268 |
cgttttcaactgatagagaacgaatatt |
26184295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 26212675 - 26212902
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| |||||||||| | |||||| ||||||||| | |||| || |
|
|
| T |
26212675 |
gtacaattcttcaagtgatgggcaactctggataacttcaaatggattattgtttttaatttcacattctttcaagcacaacaatctaagtttcttcaac |
26212774 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
||| |||||||||| | || ||| |||||| ||||| | ||| |||||||||||||||||||||| |||||| |||||||| ||||| |||||| | |
|
|
| T |
26212775 |
tttgcaatttcacgggaaaattcatcaatttcacaataatgcaattcaagagtctcaagactttgcaggcttcccaaaacagagatgtcccccaaaatga |
26212874 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaatatt |
232 |
Q |
| |
|
||||| ||| |||||||||||||||||| |
|
|
| T |
26212875 |
ctttttcaactgatagagaacgaatatt |
26212902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 26239888 - 26240083
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||| | |||| ||||| ||| | |||| || |
|
|
| T |
26239888 |
gtacaattcttcaagtgatgggcatctctggataacttcaaatggattattgcttctaattttacaatctctcaatgacaacagtctaagtttcttcaac |
26239987 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaa |
200 |
Q |
| |
|
|| |||||||| | | || ||| | |||| ||||| | ||| |||||||| ||||||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
26239988 |
attgcaatttcaggggaaaattcataaatttcacaataatccaattcaagagtttcaagactttgcaggcttccaaaaatagagatgtcacccaaa |
26240083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 26117624 - 26117848
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||||||||||||| ||||| || ||||| |||||| | |||| ||||||| ||| | |||| || |
|
|
| T |
26117624 |
gtacaattcttccaatgatgggcatctctggataacttcaaatggattattgcttataattccacaatctgtcaagtccaacagtctaagtttcttcaac |
26117723 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
|| |||||||| | | || ||| |||||| |||| | ||| ||||||| ||||||||||||| | |||| |||||||| |||||||||||| || |
|
|
| T |
26117724 |
attgcaatttcaggggaaaattcatcaattttacaataaagcaattcaagagattcaagactttgcagggttcccaaaacagagatgtcacccaaacaaa |
26117823 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaat |
229 |
Q |
| |
|
| ||| ||| ||||||||||||||| |
|
|
| T |
26117824 |
cattttcaactgatagagaacgaat |
26117848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 27401757 - 27401867
Alignment:
| Q |
6 |
tacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagtt |
105 |
Q |
| |
|
||||| ||||||||||||| |||| ||| |||||||||||||| |||| ||||||||||||||| ||| |||| ||||| | |||| |||||||||| |
|
|
| T |
27401757 |
tacaactcttcaagtgatgagcattttttaataacttcaaatggattatcctttctaatttcacaagtttccaacctcaacagtttcaagttctccagtt |
27401856 |
T |
|
| Q |
106 |
tttcaatttca |
116 |
Q |
| |
|
|| |||||||| |
|
|
| T |
27401857 |
ttccaatttca |
27401867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 26145628 - 26145689
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaattt |
66 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26145628 |
gtacaattcttcaagtgatgggcatctatggataacttcaaatggattattgcttctaattt |
26145689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 201
Target Start/End: Complemental strand, 28143584 - 28143389
Alignment:
| Q |
6 |
tacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagtt |
105 |
Q |
| |
|
||||| ||||||||||||| ||||| || || |||||||| || ||||| || |||||||||| ||| ||| | |||||||| || ||||| |||| |
|
|
| T |
28143584 |
tacaactcttcaagtgatgagcatccttcaatcacttcaaaaggattattccttgcaatttcacaactttccaatttcaacaatcgaaatttctctagtt |
28143485 |
T |
|
| Q |
106 |
tttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaat |
201 |
Q |
| |
|
|| ||||| || |||| | ||| |||||| |||| | ||| |||||||||||||| ||||||| | |||| |||| ||| ||||||||||||| |
|
|
| T |
28143484 |
ttgcaattccatgaggcaattcatcaattttacaatcatccaaatcaagagtctcaaggctttgcaggtttcccaaaatagagatgtcacccaaat |
28143389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 28493152 - 28493230
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatattt |
457 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||| | | ||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
28493152 |
caattagaatctcaagcttggaaccatcaagcttaaaggaaaacaaatccttaagatttccttcacatagcaaatattt |
28493230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 379 - 496
Target Start/End: Original strand, 26240241 - 26240358
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaac |
478 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||| ||| | | |||||||| | |||||||||| | | | ||||||||| || |||||| |||||||| |
|
|
| T |
26240241 |
caattagaatctcaagcttagagccatcaaaccaagaggaacataaatccattagatttccttggaagaacaaatatttgatattcttactcctttcaac |
26240340 |
T |
|
| Q |
479 |
cagtgacttttgactttt |
496 |
Q |
| |
|
|| |||||||||| |||| |
|
|
| T |
26240341 |
caatgacttttgattttt |
26240358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 466
Target Start/End: Original strand, 27435546 - 27435633
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttctt |
466 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||| ||| ||||| |||| | | ||||||||||| | ||||||||| || ||||| |
|
|
| T |
27435546 |
caattagaatctcaagcttagaaccatcaaaattatatgaaaatacatccattatctttccttcgcaaaacaaatatttaatgttctt |
27435633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 408
Target Start/End: Complemental strand, 27772776 - 27772665
Alignment:
| Q |
297 |
gataaatttaaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaattagaatctcaagtt |
396 |
Q |
| |
|
||||||| |||||||||| || || ||||||||||||||||||||| ||||||| || | ||| | ||| || ||| | |||||||||||||||| |
|
|
| T |
27772776 |
gataaatgcaaaacacgaatccctgcaatattttcaaagaatgaaatagggatgtccacatggtcacctttatccacatcgacgattagaatctcaagtt |
27772677 |
T |
|
| Q |
397 |
cagaaccatcaa |
408 |
Q |
| |
|
||||||||||| |
|
|
| T |
27772676 |
tagaaccatcaa |
27772665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 28492906 - 28492968
Alignment:
| Q |
145 |
tcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaactt |
207 |
Q |
| |
|
|||| |||||||||||||| ||||| | | ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
28492906 |
tcaaatcaagagtctcaaggctttgaaggtttccaaaaatagagatgtcacccaaatcgactt |
28492968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 457
Target Start/End: Original strand, 28514130 - 28514208
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatattt |
457 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||| | | ||| | ||||||||| |||||||| |||| ||||||||| |
|
|
| T |
28514130 |
caattagaatctcaagcttggaaccatcaagcttaaaggaaaacacatccttaagctttccttcacatagcaaatattt |
28514208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 496
Target Start/End: Original strand, 17750119 - 17750236
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaac |
478 |
Q |
| |
|
||||||||||||||| | |||||||||| |||| | | ||| ||||||||||| || ||||| |||| ||||||| | || ||| | || |||||||| |
|
|
| T |
17750119 |
caattagaatctcaaccttggaaccatcaagcttaaaggaaaacaaatccttaagcttgccttcacataacaaatatctaatattcatctccctttcaac |
17750218 |
T |
|
| Q |
479 |
cagtgacttttgactttt |
496 |
Q |
| |
|
|| || ||||||| |||| |
|
|
| T |
17750219 |
cattgccttttgattttt |
17750236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 496
Target Start/End: Original strand, 19051439 - 19051556
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaac |
478 |
Q |
| |
|
||||||||||||||| | |||||||||| |||| | | ||| ||||||||||| || ||||| |||| ||||||| | || ||| | || |||||||| |
|
|
| T |
19051439 |
caattagaatctcaaccttggaaccatcaagcttaaaggaaaacaaatccttaagcttgccttcacataacaaatatctaatattcatctccctttcaac |
19051538 |
T |
|
| Q |
479 |
cagtgacttttgactttt |
496 |
Q |
| |
|
|| || ||||||| |||| |
|
|
| T |
19051539 |
cattgccttttgattttt |
19051556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 496
Target Start/End: Original strand, 26117977 - 26118094
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaac |
478 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||| ||| | | |||||||| | |||||||||| | | | ||||||||| || |||||| || ||||| |
|
|
| T |
26117977 |
caattagaatctcaagcttagagccatcaaacccagaggaatataaatccattagatttccttggaagaacaaatatttgatattcttactcctatcaac |
26118076 |
T |
|
| Q |
479 |
cagtgacttttgactttt |
496 |
Q |
| |
|
|| |||||||||| |||| |
|
|
| T |
26118077 |
caatgacttttgattttt |
26118094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 496
Target Start/End: Complemental strand, 28177351 - 28177234
Alignment:
| Q |
379 |
caattagaatctcaagttcagaaccatcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaac |
478 |
Q |
| |
|
|||||||||||||||| | |||||||||| | || ||| ||| | ||||| ||| || ||||| |||| ||||||||| || || || || |||||||| |
|
|
| T |
28177351 |
caattagaatctcaagcttggaaccatcaagcatacatgaaaacacatcctcaagcttgccttcacataacaaatatttaatatttttctccctttcaac |
28177252 |
T |
|
| Q |
479 |
cagtgacttttgactttt |
496 |
Q |
| |
|
|| || ||||||| |||| |
|
|
| T |
28177251 |
cattgccttttgattttt |
28177234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 26145769 - 26145849
Alignment:
| Q |
146 |
caactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaacttttccaaatgatagagaacg |
226 |
Q |
| |
|
||| |||||||||||||||||||||| |||| |||| ||| ||||||||||||| || ||| ||| | |||||||||| |
|
|
| T |
26145769 |
caattcaagagtctcaagactttgcagtgttcccaaaatagagatgtcacccaaattgacattttcaattaatagagaacg |
26145849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 27464911 - 27464967
Alignment:
| Q |
146 |
caactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatc |
202 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||| ||| || ||||||||||| |
|
|
| T |
27464911 |
caactcaagtgtctcaagactttgcaaatttcccaaaatagagatatcacccaaatc |
27464967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 528
Target Start/End: Original strand, 73569 - 74086
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||| |||| ||||||||| ||||||| || | |
|
|
| T |
73569 |
gtacaattcttcaagtgatgtgcatctttggataacttcaaatgggttattatttctaatataacacttttccaacgtcaacaatctaaaattcttcaat |
73668 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatcaa |
204 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
73669 |
ttttcaatttcatgaggaagttcatcaattgcacaatgagtcaattcaagagtctcaagactttgcaggcctccaaaaacagaaatgtcactcaaatcaa |
73768 |
T |
|
| Q |
205 |
cttttccaaatgatagagaacgaatattcgacaatggcttcgttgattgtggtaatgatagcggatgacggtcgcgataagaactatggcgtgataaatt |
304 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| | |||||||||||||| ||||||||| |
|
|
| T |
73769 |
cttgtgcaaatgatagagaacgaatattcgacaatagctccattgattgtggtaatgatagaggatgagg------ataagaactatggcctgataaatt |
73862 |
T |
|
| Q |
305 |
taaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaattagaatctcaagttcagaacca |
404 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||| || | ||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
73863 |
caaaacacgaagccttggaatatttttaaagaatgaaatggggatttgcaaaaagcccttcatatgcatgtcgccaattagaatctcaagttcagaaaca |
73962 |
T |
|
| Q |
405 |
tcaaacttagatgcaaataaatccttaagatttccttcgcatatcaaatatttcattttcttatcgctttcaaccagtgacttttgacttttgttggaaa |
504 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
73963 |
tcaaacttatttgcaaataaatccctaagatttccttcgcatatcaaatatttgattttcttatcgctttcaaccagtgacttttgacttttgttggaaa |
74062 |
T |
|
| Q |
505 |
aatttactatcttaatctcattct |
528 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
74063 |
aatttactatcttaatctcattct |
74086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 384
Target Start/End: Complemental strand, 371 - 1
Alignment:
| Q |
5 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
371 |
gtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctaaaattctccagt |
272 |
T |
|
| Q |
105 |
ttttcaatttcacgaggaagttcttcaattgcacaactag-tcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaatca |
203 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
271 |
ttttcaatttcgggaggaagttcgttaattgcacaa-tagttcaactcaagagtctcaagactttgcaggcttccaaaaacagaaatgtcacccaaatca |
173 |
T |
|
| Q |
204 |
acttttccaaatgatagagaacgaatattcgacaatggcttcgttgattgtggtaatgatagcggatgacggtcgcgataagaactatggcgtgataaat |
303 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||| |||||| |||||||| |
|
|
| T |
172 |
acatttccaaatgatagagaacgaatattcaacaatggcttcattgattgtggtaatgatagaggat---------gataagaattatggcatgataaat |
82 |
T |
|
| Q |
304 |
ttaaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaatta |
384 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
81 |
tcaaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgtcgccaatta |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 4796 - 5164
Alignment:
| Q |
1 |
agatgtacaattcttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctc |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4796 |
agatgtacaattcttcaagtaattggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctaaaattctc |
4895 |
T |
|
| Q |
101 |
cagtttttcaatttcacgaggaagttcttcaattgcacaactagt-caactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaa |
199 |
Q |
| |
|
|||||||||||||| |||||||||| | |||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4896 |
tagtttttcaatttcgggaggaagttcgttaattgcacaa-tagttcaactcaagagtctcaagactttgcaggcttccaaaaacagaaatgtcacccaa |
4994 |
T |
|
| Q |
200 |
atcaacttttccaaatgatagagaacgaatattcgacaatggcttcgttgattgtggtaatgatagcggatgacggtcgcgataagaactatggcgtgat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| || ||||||| |||||| |||| |
|
|
| T |
4995 |
atcaacttttccaaatgatagagaacgaatattcaacaatggcttcattgattgtggtaatgatagaggatga---tc---ataagaattatggcatgat |
5088 |
T |
|
| Q |
300 |
aaatttaaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgt |
375 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5089 |
aaattcaaaacacgaagccttggaatattttcaaagaatgaaatggggatgtgcagaatgtcctccatatgcatgt |
5164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 9330670 - 9330858
Alignment:
| Q |
13 |
cttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagtttttcaat |
112 |
Q |
| |
|
|||||||||||| ||||| || || |||||||| || ||||| || ||||||||||| |||||| | ||| ||| | | ||||| |||||| || |
|
|
| T |
9330670 |
cttcaagtgatgagcatccttcaatcacttcaaaaggattattccttgcaatttcacaatctttcaagttcaataatttaagtttctctagttttgtgat |
9330769 |
T |
|
| Q |
113 |
ttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaat |
201 |
Q |
| |
|
| || |||| | ||| ||||||| |||| | |||| |||||||||||||||||||||| | || | |||| ||| |||||| |||||| |
|
|
| T |
9330770 |
tccatgaggcaattcatcaattgtacaatgattcaaatcaagagtctcaagactttgcagggtttccaaaatagagatgtcatccaaat |
9330858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 9384453 - 9384641
Alignment:
| Q |
13 |
cttcaagtgatgggcatctttggataacttcaaatgggttattatttctaatttcacaatttttcaactccaacaatctcaaattctccagtttttcaat |
112 |
Q |
| |
|
|||||||||||| ||||| || || |||||||| || ||||| || ||||||||||| |||||| | ||| ||| | | ||||| |||||| || |
|
|
| T |
9384453 |
cttcaagtgatgagcatccttcaatcacttcaaaaggattattccttgcaatttcacaatctttcaagttcaataatttaagtttctctagttttgtgat |
9384552 |
T |
|
| Q |
113 |
ttcacgaggaagttcttcaattgcacaactagtcaactcaagagtctcaagactttgcaagcttccaaaaacagaaatgtcacccaaat |
201 |
Q |
| |
|
| || |||| | ||| ||||||| |||| | |||| |||||||||||||||||||||| | || | |||| ||| |||||| |||||| |
|
|
| T |
9384553 |
tccatgaggcaattcatcaattgtacaatgattcaaatcaagagtctcaagactttgcagggtttccaaaatagagatgtcatccaaat |
9384641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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