View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_20 (Length: 280)
Name: NF8449_low_20
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 23853394 - 23853295
Alignment:
| Q |
167 |
ataaactgattcaaactatatactataatgtgtaacgcgtgtcgttaattactgaaatcttccatattgaatgagagtggtgttaatacatcatcgtttt |
266 |
Q |
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| T |
23853394 |
ataaactgattcaaacaataaactataatatgtaatgcgtgtcgttaattactgaaatcttccatattgaatgagagtggtgttaatacatcatcgtttt |
23853295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 23853515 - 23853436
Alignment:
| Q |
9 |
agcagagagatatctgatgcatattttattatatgaattataattacaatagttaagtattgaaagttgaattttgtcaa |
88 |
Q |
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| T |
23853515 |
agcaaagagatatctgatgcatattttattatatgaattataattacaatagttaaatattgaaagttgaattttgtcaa |
23853436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 23851252 - 23851198
Alignment:
| Q |
104 |
gaaagttgaatcgatgtatggaaggtatgcactgcttgatttgtgcctaaatatc |
158 |
Q |
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| T |
23851252 |
gaaagttgaaacgatgtatgacatgtatgcactgcttgatttgtgcctaaatatc |
23851198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 23851593 - 23851555
Alignment:
| Q |
48 |
ataattacaatagttaagtattgaaagttgaattttgtc |
86 |
Q |
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| T |
23851593 |
ataattacaatagctaagtattgaaagttgaattatgtc |
23851555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 3139830 - 3139887
Alignment:
| Q |
101 |
attgaaagttgaatcgatgtatggaaggtatgcactgcttgatttgtgcctaaatatc |
158 |
Q |
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| T |
3139830 |
attgaaatttgaaacgatgtatggaaggtatgcactgcttgatttgtgcctgaatatc |
3139887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 3158070 - 3158131
Alignment:
| Q |
203 |
gcgtgtcgttaattactgaaatcttccatattgaatgagagtggtgttaatacatcatcgtttt |
266 |
Q |
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| T |
3158070 |
gcgtgtcgttaattactgaaatcttccgtattgaat--gagtggtgttaataaatcatcgtttt |
3158131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 3157596 - 3157655
Alignment:
| Q |
99 |
gtattgaaagttgaatcgatgtatggaaggtatgcactgcttgatttgtgcctaaatatc |
158 |
Q |
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| T |
3157596 |
gtatcgaaagtttaaacgatgtatggaaggtatgcactgcttgatttgtgcttaattatc |
3157655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 3157564 - 3157607
Alignment:
| Q |
33 |
tttattatatgaattataattacaatagttaagtattgaaagtt |
76 |
Q |
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| T |
3157564 |
tttattatttgaattataattacaatagctaagtatcgaaagtt |
3157607 |
T |
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