View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_24 (Length: 240)
Name: NF8449_low_24
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 41928488 - 41928596
Alignment:
| Q |
1 |
ttgtaagttgtaacagaaaaagtgtttaataagattggtgttgtgacacattaacttgattatattaattagnnnnnnnncacattgatttatttataaa |
100 |
Q |
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| T |
41928488 |
ttgtaagttgtaacaaaaaaagtgtttaataagattggtgttgtgacacattaacttgattctattaattagttttttcccacattgatttatttattaa |
41928587 |
T |
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| Q |
101 |
ttaagactt |
109 |
Q |
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|||| |||| |
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| T |
41928588 |
ttaaaactt |
41928596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 41928632 - 41928673
Alignment:
| Q |
184 |
caaatatggaaaattgaactccaaaaattcaaccaatttttt |
225 |
Q |
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| T |
41928632 |
caaatatggaaaattgaactcctaaaatccaaccaatttttt |
41928673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 41926580 - 41926540
Alignment:
| Q |
139 |
agtacaaaaccaaataacaaagtaaaatgttcgtcacagtc |
179 |
Q |
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| T |
41926580 |
agtacaaaaccaaataaccaagcaaaatgttcgtcacagtc |
41926540 |
T |
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