View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_27 (Length: 237)
Name: NF8449_low_27
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4765229 - 4765007
Alignment:
| Q |
1 |
tttttctcggcaattttggcgatcccaataatccatatatctccttttaaaaactcacaataacaaagcaaatgagagggcagaacagagctacgcaaga |
100 |
Q |
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| T |
4765229 |
tttttctcggcaattttggcgatcccaataatccatatatctccttttaaaaactcacaataacaaagcaaatgagagtgcagaacagagctacgcaaga |
4765130 |
T |
|
| Q |
101 |
gacaatacttgattcgaattctgatcaacaaataacaaccgtgacaatctcaaaacaagaagaagagtaaacccataattaataccttatgttaaaatat |
200 |
Q |
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| T |
4765129 |
gacaatacttgattcgaattctgatcaacaaataacaaccgtgacaatctcaaaacaagaagaagagtaaacccataattaataccttatgttaaaatat |
4765030 |
T |
|
| Q |
201 |
aaatagtggcacttagaaggaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4765029 |
aaatagtggcacttagaaggaag |
4765007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 12065802 - 12065980
Alignment:
| Q |
12 |
aattttggcgatcccaataatccatatatctccttttaaaaactcacaataacaaagcaaatgagagggcagaacagagctacgcaagagacaatacttg |
111 |
Q |
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| T |
12065802 |
aattttggtgatcccaataatccatatctgtccttttaaaaactcactgtaacaaagcaaatgagagtgcagaacagaaccac-------acagtact-g |
12065893 |
T |
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| Q |
112 |
attcgaattctgatcaacaaataacaaccgtgacaatctcaaaacaagaagaagagtaaacccataattaataccttatgttaaaatata |
201 |
Q |
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| T |
12065894 |
attcgaattttgatcaacaaataacaaccgtgacaatcttaa---aataagtagaggaaacccataattaataccttatgttaaaatata |
12065980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12072575 - 12072789
Alignment:
| Q |
1 |
tttttctcggcaattttggcgatcccaataatccatatatctccttttaaaaactcacaataacaaagcaaatgagagggcagaacagagctacgcaaga |
100 |
Q |
| |
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||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||| |||| |||| |||||||| |||||||||| | || |
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| T |
12072575 |
tttttctcgacaattttggagatcccaataatccatatctgtccttttaaaaactcactgtaacgaagctaatgagagtgcagaacagaaccac------ |
12072668 |
T |
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| Q |
101 |
gacaatacttgattcgaattctgatcaacaaat-aacaaccgtgacaatctcaaaacaagaagaagagtaaacccataattaataccttatgttaaa--a |
197 |
Q |
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||| ||| ||||||||||| ||||||| |||| |||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||| | |
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| T |
12072669 |
-acagtac-tgattcgaattttgatcaagaaataaacaaccgtgacaatctcaa---aataagtagaggaaacccataattaataccttatgttaaaata |
12072763 |
T |
|
| Q |
198 |
tataaatagtggcacttagaaggaag |
223 |
Q |
| |
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|||| |||||| ||||| |||||||| |
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| T |
12072764 |
tatatatagtgtcacttggaaggaag |
12072789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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