View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8449_low_29 (Length: 232)

Name: NF8449_low_29
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8449_low_29
NF8449_low_29
[»] chr5 (7 HSPs)
chr5 (19-220)||(1744932-1745133)
chr5 (19-220)||(1739595-1739793)
chr5 (19-219)||(1725241-1725438)
chr5 (80-220)||(1715552-1715695)
chr5 (89-157)||(1760718-1760786)
chr5 (175-220)||(1739424-1739469)
chr5 (184-220)||(1744767-1744803)
[»] chr3 (4 HSPs)
chr3 (118-219)||(3167638-3167739)
chr3 (73-219)||(3156507-3156653)
chr3 (118-219)||(3138820-3138921)
chr3 (118-212)||(2023212-2023306)
[»] chr8 (1 HSPs)
chr8 (118-219)||(23852503-23852607)
[»] chr7 (1 HSPs)
chr7 (95-220)||(7490802-7490921)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 1745133 - 1744932
Alignment:
Q  19 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1745133 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 1745034  T
Q  119 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1745033 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 1744934  T
Q  219 aa 220  Q
    ||    
T  1744933 aa 1744932  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 1739793 - 1739595
Alignment:
Q  19 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 118  Q
    ||||||||||||||||||| | ||| ||||| |||| |||||||| |||||||   ||||||||| ||||| ||||||||||||||||||||||||| ||    
T  1739793 aattggaggattcttcttccgagttaaacttagacagatcaatattatccttg---gtagtagtatgatcctcactatttttattgtttatgattgtact 1739697  T
Q  119 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 218  Q
    ||||||||| |||||||||||||||||||||||| ||||  |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  1739696 tgaacttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatcctcgaagcagttgcaccacca 1739597  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 1725438 - 1725241
Alignment:
Q  19 aattggaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgct 118  Q
    ||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||| |   |||||| |||||||||| |||||||||| | |    
T  1725438 aattggaggattcttcttcagctttgaacttcgacatatcaatatcatccttggtggtagtagca---tccacaatatttttattttttatgattgcgtt 1725342  T
Q  119 tgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacca 218  Q
    ||||||||| ||||||| | |||||||||||||  |||||  |||||||||||| || |||||  |  |||||||||||||||||| |||| ||||||||    
T  1725341 tgaacttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttattatttgtgtcatcttcaatccttgaagtagttccaccacca 1725242  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 1715552 - 1715695
Alignment:
Q  80 agtaggatccacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaa---gaatctccaaatttagtaatagcaccaatcttg 176  Q
    |||||||||||| ||||||||||| || |||||||   |||||||| | ||||| |||| ||||   ||||||||||||||  ||| | | ||||| |||    
T  1715552 agtaggatccacgctatttttatttttcatgattgaatttgaacttatagcaacgtttgcagaagaagaatctccaaattttataagaactccaattttg 1715651  T
Q  177 ttattcataccatcttcaatccttgaagcagttgcaccaccaaa 220  Q
    |||||  |||||||||||||| |||||  | ||||||| |||||    
T  1715652 ttattggtaccatcttcaatctttgaaataattgcacccccaaa 1715695  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 1760786 - 1760718
Alignment:
Q  89 cacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaaattt 157  Q
    |||| |||||||||||| |||||||| | ||||||||||  ||| |||||||||||||| ||| |||||    
T  1760786 cacattatttttattgtgtatgattgagtttgaacttgtatcaatatttgtagaagaatatccgaattt 1760718  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 1739469 - 1739424
Alignment:
Q  175 tgttattcataccatcttcaatccttgaagcagttgcaccaccaaa 220  Q
    |||||||  ||||||||||||||||||||| ||||| |||||||||    
T  1739469 tgttatttgtaccatcttcaatccttgaagtagttgaaccaccaaa 1739424  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 1744803 - 1744767
Alignment:
Q  184 taccatcttcaatccttgaagcagttgcaccaccaaa 220  Q
    ||||||||||||||||||||| | |||||||||||||    
T  1744803 taccatcttcaatccttgaagtaattgcaccaccaaa 1744767  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 3167739 - 3167638
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacc 217  Q
    |||||||||| ||||||||||||||||||||||| |||||   |||||||||||| || |||||  |||||||||| |||||||||| | ||||||||||    
T  3167739 ttgaacttgtagcaacatttgtagaagaatctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagtacttgcaccacc 3167640  T
Q  218 aa 219  Q
    ||    
T  3167639 aa 3167638  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 3156507 - 3156653
Alignment:
Q  73 tggtagtagtaggatccacactatttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaat 172  Q
    |||||| ||||||| ||||| || |||  || | |||| ||| | |||||||||  ||||||||||||||||||||||| |||||   ||||||||| ||    
T  3156507 tggtagaagtaggagccacaataatttgcttttctatgtttgagtttgaacttgcagcaacatttgtagaagaatctcctaattttagaatagcacctat 3156606  T
Q  173 cttgttattcataccatcttcaatccttgaagcagttgcaccaccaa 219  Q
     || |||||  ||||||||||||||||||||| | ||||||||||||    
T  3156607 tttattatttgtaccatcttcaatccttgaagtacttgcaccaccaa 3156653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 3138820 - 3138921
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccacc 217  Q
    ||||| |||| ||||| ||||||||||||||||| ||||    |||||||||||| || ||||   |||||| ||| ||| |||||| ||||||||||||    
T  3138820 ttgaaattgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatatgtaccatattcgatctttgaagtagttgcaccacc 3138919  T
Q  218 aa 219  Q
    ||    
T  3138920 aa 3138921  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 2023306 - 2023212
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaa-tttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgca 212  Q
    |||||||||| | ||||||||||||||||||| |||| ||||| | ||| |||||| || |||||   |||||||||||||||| ||| |||||||    
T  2023306 ttgaacttgttgtaacatttgtagaagaatcttcaaactttag-attagtaccaattttattattttcaccatcttcaatccttaaagtagttgca 2023212  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 23852607 - 23852503
Alignment:
Q  118 ttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaa---tcttgttattcataccatcttcaatccttgaagcagttgcacc 214  Q
    |||||||||| |||| |||||||||||||||||| |||||   |||||||||||   | || |||||  |||||||||| || ||||||| |||||||||    
T  23852607 ttgaacttgtagcaatatttgtagaagaatctcccaattttaaaatagcaccaattttattattatttgtaccatcttcgattcttgaagtagttgcacc 23852508  T
Q  215 accaa 219  Q
     ||||    
T  23852507 gccaa 23852503  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 7490802 - 7490921
Alignment:
Q  95 atttttattgtttatgattgtgcttgaacttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttca 194  Q
    |||||| |||||| || ||| |||||||||||| ||||      ||||||||||||||| |||   |||||||||||| || |||||  |||||||||||    
T  7490802 atttttcttgtttgtgtttgagcttgaacttgtagcaa------tagaagaatctccaagttttagaatagcaccaattttattatttgtaccatcttca 7490895  T
Q  195 atccttgaagcagttgcaccaccaaa 220  Q
    || ||||||| | |||| ||||||||    
T  7490896 attcttgaagtacttgctccaccaaa 7490921  T

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