View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_3 (Length: 535)
Name: NF8449_low_3
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 7646060 - 7645640
Alignment:
| Q |
1 |
atattgtgaagggatgtgatgtctcattcctttggagaagggtatgctacgaggtctgatgaagaaggatttggagggatatatagtggaaaccaatccc |
100 |
Q |
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| T |
7646060 |
atattgtgaagggatgtgatgtctcattcctttggagaagggtatgctacaaggtctgatgaagaaggatttggagggatatatggtggaaaccaatccc |
7645961 |
T |
|
| Q |
101 |
ttcagaaagataagtccgtccatgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaactagnnnnnnnccttacgtttaaa |
200 |
Q |
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| T |
7645960 |
ttcagaaagataagtccgtccatgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaactagtttttttccttacgtttaaa |
7645861 |
T |
|
| Q |
201 |
acattttacaccgtcaatttcttattacttttgtagaggtcatgatggaaattaattattaagcctaattcagacttgtttgtttttgtgcatgaagatt |
300 |
Q |
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| T |
7645860 |
acattttacaccgtcattttcttattacttttgtagaggtcatg---gaaattaattattaagcctaattaagacttgtttgtttttgtgcatgaagatt |
7645764 |
T |
|
| Q |
301 |
atgacaagacacagggaagcgaggtgaaagagaaggaaaaagctaggcaccagagcagcgcaaatgcttaggtttttcttgtgtgtagtggtttatgcaa |
400 |
Q |
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| T |
7645763 |
atgacaagacacagggaagcgaggtgaaagagaaggaaaaagctaggcaccagagcagcgccaatgcttaggtttttcttgtgtgtagtggtttatgcaa |
7645664 |
T |
|
| Q |
401 |
taaacacatgtatttgcagttaga |
424 |
Q |
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| T |
7645663 |
taaacacatgtatttgcagttaga |
7645640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 7645583 - 7645545
Alignment:
| Q |
481 |
ctcagagtgataatatggacaattatgtataagtattat |
519 |
Q |
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| T |
7645583 |
ctcagagtgataatatggacaattatgtataagtattat |
7645545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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