View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_37 (Length: 206)
Name: NF8449_low_37
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 1940084 - 1940256
Alignment:
| Q |
15 |
atgaaagaaactatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttggacaaagtgaggactttcaaagatggtaaaatcaaa |
114 |
Q |
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| T |
1940084 |
atgaatgaaactatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttggacaaagtgaggactttcaaagatggtaaaatcaaa |
1940183 |
T |
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| Q |
115 |
atatcaaaggaaggtgaacttcttcataatgaagatggaacagcaatttcaggtgacattcgtaatagttggg |
187 |
Q |
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| T |
1940184 |
atatcaaaggaaggtgaacttcttcataatgaagatggaacagcaatttcaggtgacattcgtaatagttggg |
1940256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 1954551 - 1954717
Alignment:
| Q |
21 |
gaaactatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttggacaaagtgaggactttcaaagatggtaaaatcaaaatatca |
120 |
Q |
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| T |
1954551 |
gaaactatatgataatagggatggaagtgtgatatatggaagcaatcaagaagttttgaacaaagtgagaactttcaaagatgggaagttaaaaatatta |
1954650 |
T |
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| Q |
121 |
aaggaaggtgaacttcttcataatgaagatggaacagcaatttcaggtgacattcgtaatagttggg |
187 |
Q |
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| T |
1954651 |
gacgatggtacccttaagcaaaatgaaaatggagtagcaatttcaggtgacgttcgcaatagttggg |
1954717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 1925776 - 1925929
Alignment:
| Q |
37 |
agggatggaagtgtgatatatggaagcaatcaagaagttttggacaaagtgaggactttcaaagatggtaaaatcaaaatatcaaaggaagg---tgaac |
133 |
Q |
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| T |
1925776 |
agggatggaagtgtgatatatggaagcaatgatgaaattttgacccaagtgaggacttcccaagatgggaagttaaaaatatcaaaggaaggaaatcatc |
1925875 |
T |
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| Q |
134 |
ttcttcataatgaagatggaacagcaatttcaggtgacattcgtaatagttggg |
187 |
Q |
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| T |
1925876 |
ttctacaaaacgaagatggagttgcaatttcaggtgatgttcgcaatagttggg |
1925929 |
T |
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