View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_6 (Length: 517)
Name: NF8449_low_6
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 505428 - 504928
Alignment:
| Q |
1 |
aaggttttctgttgcgtatttcttatgcccttcaaacgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
505428 |
aaggttctctgttgcgtatttcttatgcccttcaaatgacaccatgattgagagttgcaaagagccctctatataccgcaaattcagctttaaagaatat |
505329 |
T |
|
| Q |
101 |
agacaacaagttcgtgatgatgttcagaagttaggttccaaaataggcctacctaggtttatcataaattaggatccgactcttctacattcagagattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
505328 |
agacaacaagttcgtgatgatgttcagaagttaggttccaaaataggcctacctaggtttatcataaattaggatccgactcctctatattcagagattc |
505229 |
T |
|
| Q |
201 |
cccacattcatgcagtcgtaaaattagtggtcgttcgatcaaaatcatatggttcatatttaaactcctattttaaatcataaaattgaaatttgcannn |
300 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505228 |
cccacattcatgcagtcgtaacattagtggccgttcgatcaaaatcatatggttcatatttaaactcctattttaaatcataaaattgaaatttgca--t |
505131 |
T |
|
| Q |
301 |
nnnnngtacttgatcttgatcaaatatccatcgatgtccaaaatgcgtgaacgtgggatactcctaaatctaaattccataaaggaactatgtagtgcat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505130 |
tttttgtacttgatcttgatcaaatatccatcgatgtccaaaatgcgtgaacgtgggatactcctaaatctaaattccataaaggaactatgtagtgcat |
505031 |
T |
|
| Q |
401 |
atatagttagcatagcattgttgtggaatatagcattcaaacacctttttggtcatgttatatgtgagaacttgagagaacattatacagagaacaagag |
500 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
505030 |
atatagttagcatagcattattgtggaatatagtattcaaacacctttttggtcatgttatatgtgagaacttgagagaacattatacagagaacaagag |
504931 |
T |
|
| Q |
501 |
agt |
503 |
Q |
| |
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||| |
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| T |
504930 |
agt |
504928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 16702254 - 16702099
Alignment:
| Q |
1 |
aaggttttctgttgcgtatttcttatgcccttcaaacgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatat |
100 |
Q |
| |
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|||||| ||| | ||||||||||| ||||||||||| |||| |||| ||||| |||||| |||| ||| | ||| | || ||||| |||||||| |
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| T |
16702254 |
aaggttctctatggcgtatttcttgtgcccttcaaatgagagtgtgatagagagctgcaaaaagccatctctttacaaagagtttagcttccaagaatat |
16702155 |
T |
|
| Q |
101 |
agacaacaagttcgtgatgatgttcagaagttaggttccaaaataggcctacctag |
156 |
Q |
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| T |
16702154 |
cggcaacaagttcgagatgatgttcagaagttggggaccaaaataggcctacctag |
16702099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 17676490 - 17676335
Alignment:
| Q |
1 |
aaggttttctgttgcgtatttcttatgcccttcaaacgagaccatgattgagagttgcaaagagccctctgtataccgcaaattcagctttaaagaatat |
100 |
Q |
| |
|
|||||| ||| | ||||||||||| ||||||||||| |||| |||| ||||| |||||| |||| ||| | ||| | || ||||| |||||||| |
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| T |
17676490 |
aaggttctctatggcgtatttcttgtgcccttcaaatgagagtgtgatagagagctgcaaaaagccatctctttacaaagagtttagcttccaagaatat |
17676391 |
T |
|
| Q |
101 |
agacaacaagttcgtgatgatgttcagaagttaggttccaaaataggcctacctag |
156 |
Q |
| |
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| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
17676390 |
cggcaacaagttcgagatgatgttcagaagttggggaccaaaataggcctacctag |
17676335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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