View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8449_low_9 (Length: 405)
Name: NF8449_low_9
Description: NF8449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8449_low_9 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 10699 - 10301
Alignment:
| Q |
1 |
tttttagggagagatgtatcagatgctaagataaaagctatgccttctcctccgggcgatgtttgaggacttatgttgagaacaaaagtggtgttaaaag |
100 |
Q |
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| T |
10699 |
ttttcagggagagatgtatcagaagctaatataaaagctatgccttctcctccgggcgatgtttgaggacttatgttgagaacaaaagtggtgttaaaag |
10600 |
T |
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| Q |
101 |
aagaaagtttgtttttgttccaaagtgtgtatggctttatgtaaaaagcacgtccagaatagttttctatttcaccacgattatctggggttacttgaat |
200 |
Q |
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| T |
10599 |
aagaaagtttgtttttgttccaaagtgtgtatggctttatgtaaaaagcacgtccagaatagttttctatttcaccgcgattatctggggttacttggat |
10500 |
T |
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| Q |
201 |
agcatctttgtatatatttgcgaattcacttagtaacaacttggttgatctatcactttgttggaaggttgggaaattgaaataaaaggaattaactttg |
300 |
Q |
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| T |
10499 |
agcatctttgtatatatttgcgaatttacttagtaacaacttggttgatctatcactttgttggaaggttgggaaattgaaataaaaggaattaactttg |
10400 |
T |
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| Q |
301 |
gttaaggctatgatagtgaatatgattgataataattgatatttcat------------gatgaatttgttgtaatttcagacaacgtgagcaatcacc |
387 |
Q |
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| T |
10399 |
gttaaggctatgatagtgaatatgattgataataattgatatttcatgatgttttatttgatgaatttgttgtaatttcagacaacgtgagcaatcacc |
10301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 36395 - 36055
Alignment:
| Q |
7 |
gggagagatgtatcagatgctaagataaaagctatgccttctcctccgggcgatgtttgaggacttatgttgagaacaaaagtggtgttaaaagaagaaa |
106 |
Q |
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| T |
36395 |
gggagagttgtatctgaagttaagataaaggctatgccttctccacgaggggaagttacaggacttatgttgagaacaaaagttgtgttgaaagaagaaa |
36296 |
T |
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| Q |
107 |
gtttgtttttgttccaaagtgtgtatggctttatgtaaaaagcacgtccagaatagttttctatttcaccac---gattatctggggttacttgaatagc |
203 |
Q |
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| T |
36295 |
gtttgtttttcttccaaagtgtgtatggctttttgtaaaaagcacgtccagaataatttgatattggactaccgcgattatctggggttacttggatatc |
36196 |
T |
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| Q |
204 |
atctttgtatatatttgcgaattcacttagtaacaacttggttgatctatcactttgttggaaggttgggaaattgaaataaaaggaattaactttggtt |
303 |
Q |
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| T |
36195 |
atctttgtatatgtttgagtatttgcttagtagaaagttggttgatctatcactttgttggaaggttgggaaattgaaataaaaggaattaactttggtt |
36096 |
T |
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| Q |
304 |
aaggctatgatagtgaatatgattgataataattgatattt |
344 |
Q |
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| T |
36095 |
aaggctatgatagtgaatatgattgctaatgattgatattt |
36055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 20070 - 20180
Alignment:
| Q |
27 |
taagataaaagctatgccttctcctccgggcgatgtttgaggacttatgttgagaacaaaagtggtgttaaaagaagaaa---gtttgtttttgttccaa |
123 |
Q |
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| T |
20070 |
taagataaaggctatgccttctccaccaggtgaagtttcaggacttatgtagagaacaaaagtggtgttgaaggaagctattgttttgtttttgttccaa |
20169 |
T |
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| Q |
124 |
agtgtgtatgg |
134 |
Q |
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|||||| |||| |
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| T |
20170 |
agtgtgaatgg |
20180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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