View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8450_high_5 (Length: 411)
Name: NF8450_high_5
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 110 - 393
Target Start/End: Complemental strand, 37496189 - 37495908
Alignment:
| Q |
110 |
aattgtagaaacaaggaagggtgacgctccgtaccnnnnnnnnnnnnctaacgatnnnnnnntgttggtctcgagttaaacagaagagaattgcatgtaa |
209 |
Q |
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| T |
37496189 |
aattgtagaaacaaggaagggtgacgctccgtacc--tttttcttttctaacgataaaaaaatgttggtctcgagttaaacagaagagaattgcatgtaa |
37496092 |
T |
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| Q |
210 |
ccaaaacacttttgaagctaagtaaaggtggctgcaattctctaaaaattgcctttaacttttaagctcaataatagtatgaacaataagaacattatga |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496091 |
ccaaaacatttttgaagctaagtaaaggtggctgcaattctctaaaaattgcctttaacttttaagctcaataatagtatgaacaataagaacattatga |
37495992 |
T |
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| Q |
310 |
gttgtcagtttacgcgtaaaaatgcttttggatccacgcataatgcatttatatggagtatttctgcaataataatgccccacc |
393 |
Q |
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| T |
37495991 |
gttgtcagtttacgcgtaaaaatgcttttggatccacgcataatgcatttatatggagtatttctgcaataataatgccccacc |
37495908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 28139192 - 28139111
Alignment:
| Q |
1 |
gtttaaaaattacacaatcatggtttgtttgtataggttgcagataaagttttgatctactccctccgtcaatatttataat |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28139192 |
gtttaaaaattacacaatcatggtttgtttgtataggttgcagataaagttttgatctactccctccgtcaatatttataat |
28139111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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