View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8450_high_8 (Length: 288)
Name: NF8450_high_8
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 40489191 - 40489449
Alignment:
| Q |
19 |
gttggagcagagagacaaagattcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatata |
118 |
Q |
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| T |
40489191 |
gttggaccagagagacaaagattcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatata |
40489290 |
T |
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| Q |
119 |
gaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtggg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40489291 |
gaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtggg |
40489390 |
T |
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| Q |
219 |
ttgcaattttccaattcttcacaaacacaactcatcagtttcacattctccattttctt |
277 |
Q |
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| T |
40489391 |
ttgcaattttccaattgttcacaaacacaactcatcagtttcacattctccattttctt |
40489449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 40466209 - 40466439
Alignment:
| Q |
19 |
gttggagcagagagacaaagattcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatata |
118 |
Q |
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| T |
40466209 |
gttggaccagagagacaaagattcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatata |
40466308 |
T |
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| Q |
119 |
gaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtggg |
218 |
Q |
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| T |
40466309 |
gaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcacttgtagagatagaaagtgctgaagatcatgatttgggttttgtggg |
40466408 |
T |
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| Q |
219 |
ttgcaattttccaattcttcacaaacacaac |
249 |
Q |
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| T |
40466409 |
ttgcaattttccaattgttcacaaacacaac |
40466439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 40472545 - 40472711
Alignment:
| Q |
19 |
gttggagcagagagacaaagattcgtaatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatata |
118 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
40472545 |
gttggaccagagagacaaagattcataatcaagatcaaaatattcaaccatcctttgttcaaaactcttttggaagatgttgagaacgaatatggatata |
40472644 |
T |
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| Q |
119 |
gaaatgatggtcctctatggcttccttgtgatgttgacttgttctgtgaggcacttgtagagataga |
185 |
Q |
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| T |
40472645 |
gaaacgatggtcctctatggtttccttgtgacgttgatttattttgtgagatacttgtagatataga |
40472711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 40480377 - 40480456
Alignment:
| Q |
76 |
tttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
155 |
Q |
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| T |
40480377 |
tttaaaactcttttagaagatgttgacaatgaatatggatataaaagtgatggtcctctatggcttccttgtgacgttga |
40480456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 7624788 - 7624847
Alignment:
| Q |
47 |
tcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatg |
106 |
Q |
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| T |
7624788 |
tcaagatcagaatattcaatcaccctttgtttaaaactcttttaggagctgttgagaatg |
7624847 |
T |
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