View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8450_low_2 (Length: 620)
Name: NF8450_low_2
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_low_2 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Complemental strand, 11492112 - 11491513
Alignment:
| Q |
18 |
ttctcgagttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat-----------------gtttcatcaccttctgcatag |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
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| T |
11492112 |
ttcttgagttggtttagattcaatttattttatgaattgtttataggtgaattagggttcataaggatggttcacaattgtttcattaccttctgcatag |
11492013 |
T |
|
| Q |
101 |
ttctaaatatgtaagttcttcatcttctctcatcatttgaaaagttaatagggatttagtgaaaaagatgaagctagtgctcgttaagtgtttgagaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11492012 |
ttctaaatatgtaagttcttcatcttctctcatcatttgaaaagtta-tagggatttagtgaaaaagatgaagctagtgctcgttaagtgtttgagaaca |
11491914 |
T |
|
| Q |
201 |
ctctatttttgtacttctacgatattgaataacatggaaaatatgggtattttggacaaaaaattcaatcgcatgcaaccaaattaattatatattatat |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491913 |
ctctatttttgtacttatacgatattgaataacatggaaaatatgggtgttttggacaaaaaattcaatcgcatgcaaccaaattaattatatattatat |
11491814 |
T |
|
| Q |
301 |
tcaattgaatgaattctactatatcaaactgtcaataaaattacctatttttaataggaaaaaattaactttgaacttttttattggactaaatacgaag |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491813 |
tcaattgaatgaattctactatatcaaactgtcaataaaattacctatttttaataggaaaaaattaactttgaacttttttattggactaaatacgaag |
11491714 |
T |
|
| Q |
401 |
cataaatgtaattagctgtgctgaagctctagcgtcgaagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaacc |
500 |
Q |
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| T |
11491713 |
cataaatgtaattagatgtgctgaagctctagcgtcgaagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaacc |
11491614 |
T |
|
| Q |
501 |
gattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactttgttgctcgactgaa |
600 |
Q |
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| T |
11491613 |
gattgaaaaaagcaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactttgttgctcgactgaa |
11491514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 601
Target Start/End: Complemental strand, 38166904 - 38166792
Alignment:
| Q |
486 |
aggaattgtagaaccgattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactt |
585 |
Q |
| |
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|||||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
38166904 |
aggaattgtagaactgattggcag---caagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactt |
38166808 |
T |
|
| Q |
586 |
tgttgctcgactgaag |
601 |
Q |
| |
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||| |||| ||||||| |
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| T |
38166807 |
tgtagctcaactgaag |
38166792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 601
Target Start/End: Original strand, 38172976 - 38173088
Alignment:
| Q |
486 |
aggaattgtagaaccgattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactt |
585 |
Q |
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|
|||||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
38172976 |
aggaattgtagaactgattggcag---caagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactt |
38173072 |
T |
|
| Q |
586 |
tgttgctcgactgaag |
601 |
Q |
| |
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||| |||| ||||||| |
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| T |
38173073 |
tgtagctcaactgaag |
38173088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 486 - 601
Target Start/End: Original strand, 38200200 - 38200312
Alignment:
| Q |
486 |
aggaattgtagaaccgattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactt |
585 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
38200200 |
aggaattgtagaactgattggcag---caagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactt |
38200296 |
T |
|
| Q |
586 |
tgttgctcgactgaag |
601 |
Q |
| |
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||| |||| ||||||| |
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| T |
38200297 |
tgtagctcaactgaag |
38200312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 507
Target Start/End: Complemental strand, 38167099 - 38167030
Alignment:
| Q |
438 |
aagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaaccgattgga |
507 |
Q |
| |
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||||||||||||||| |||| || ||||||||||||||| | ||||||||| |||||||||||||||| |
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| T |
38167099 |
aagttcttttgccaacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattgga |
38167030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 507
Target Start/End: Original strand, 38172781 - 38172850
Alignment:
| Q |
438 |
aagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaaccgattgga |
507 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||||| | ||||||||| |||||||||||||||| |
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| T |
38172781 |
aagttcttttgccaacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattgga |
38172850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 507
Target Start/End: Original strand, 38200005 - 38200074
Alignment:
| Q |
438 |
aagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaaccgattgga |
507 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||||| | ||||||||| |||||||||||||||| |
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| T |
38200005 |
aagttcttttgccaacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattgga |
38200074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 24557486 - 24557617
Alignment:
| Q |
81 |
tttcatcaccttctgcatagttctaaatatgtaagttcttcatcttctctcatcatttgaaaagttaatagggatttagtgaaaaagatgaagctagtgc |
180 |
Q |
| |
|
||||||||| | |||||||||| |||| |||||||||||||||| |||| | |||||||||||| |||| |||||||||||||||||||||| | ||| |
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| T |
24557486 |
tttcatcacttgatgcatagttccaaatttgtaagttcttcatct--tctccttatttgaaaagtt-atagagatttagtgaaaaagatgaagcaaatgc |
24557582 |
T |
|
| Q |
181 |
tcgttaagtgtttgagaacactctatttttgtactt |
216 |
Q |
| |
|
| | ||||||||||| |||||||||||||| ||||| |
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| T |
24557583 |
ttg-taagtgtttgataacactctatttttctactt |
24557617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 10264454 - 10264401
Alignment:
| Q |
26 |
ttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
79 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
10264454 |
ttggtttagattcaatttattttctgaattgtttataggtgaattagggatcat |
10264401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 13180294 - 13180347
Alignment:
| Q |
26 |
ttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
79 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
13180294 |
ttggtttagattgaatttattttatgaattgtttgtaggtgaattggggatcat |
13180347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 10264371 - 10264296
Alignment:
| Q |
81 |
tttcatcaccttctgcatagttctaaatatgtaagttcttcatcttctctcatcatttgaaaagttaatagggatttagt |
160 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| | ||||||||||| | |||||||||||| ||||||||||||| |
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|
| T |
10264371 |
tttcatctccttctgtatagttctaaatatgta---tgctcatcttctcttgttatttgaaaagtt-atagggatttagt |
10264296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 444742 - 444806
Alignment:
| Q |
152 |
ggatttagtgaaaaagatgaagctagtgctcgttaagtgtttgagaacactctatttttgtactt |
216 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||| ||||||||||||||| ||||||||||| |
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| T |
444742 |
ggatttagtgaaaaagaggaagctaatgcttattaaaggtttgagaacactctttttttgtactt |
444806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 444603 - 444665
Alignment:
| Q |
17 |
attctcgagttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
79 |
Q |
| |
|
||||| || ||||||| |||| || |||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
444603 |
attctggaattggtttcgattgaagttattttatgaattgtttgtaggtgaattggggatcat |
444665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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