View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8450_low_3 (Length: 462)
Name: NF8450_low_3
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Complemental strand, 30428934 - 30428494
Alignment:
| Q |
8 |
ttggtgttccttctatgaataactctggatattcgtctaggatctcctttgacatcaccgtgtatcttgttttcacagttgtgtttttgcctaaaaatga |
107 |
Q |
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| T |
30428934 |
ttggtgttccttctatgaataactctggatattcgtctaggatctcctttgacatcaccgtgtatcttgttttcacagttgtgtttttgcctaaaaatga |
30428835 |
T |
|
| Q |
108 |
tcatacgaataaacattaagtattgcaatttagattagtaatcttttttactatagtttcttagattaataaataagagagtaaagaatcaatttgactt |
207 |
Q |
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| T |
30428834 |
tcatacgaataaacattaagtattgcaatttagattagtaatcttttttactatagttttttagattaataaataagagagtaaagaatcaatttgactt |
30428735 |
T |
|
| Q |
208 |
acaaagacgcgtcaatttctccttaacataatcatcttcacacttagtgtcacgaatgtacccttcaaccaaacactcttgaggaaggacttgactaggg |
307 |
Q |
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| T |
30428734 |
acaaagacgcgtcaatttctccttaacataatcatcttcacacttagtgtcacgaatgtacccttcaaccaaacactcttgaggaaggacttgactaggg |
30428635 |
T |
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| Q |
308 |
aaagccttccctaaagcaagtattgtggccttccccggaacaggagcacgtctaacgcgctcaccattcgcagaagaacttccattcaaatcaccttgag |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30428634 |
aaagccttccctaaagcaagtattgtggccttccccggaacaggagcacgtgtaacgcgctcaccattcgcagaagaacttccattcaaatcaccttgag |
30428535 |
T |
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| Q |
408 |
gcatcttttttgagatataagcaaatactatttcttcttgt |
448 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
30428534 |
gcatcttttttgagatttaagcaaatactatttcttcttgt |
30428494 |
T |
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