View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8450_low_4 (Length: 451)

Name: NF8450_low_4
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8450_low_4
NF8450_low_4
[»] chr6 (4 HSPs)
chr6 (319-440)||(13692799-13692920)
chr6 (98-279)||(13692576-13692759)
chr6 (327-429)||(13686346-13686448)
chr6 (321-423)||(13673473-13673575)
[»] chr1 (9 HSPs)
chr1 (79-161)||(42747731-42747813)
chr1 (76-118)||(5923888-5923930)
chr1 (78-152)||(21516465-21516539)
chr1 (78-151)||(31117556-31117629)
chr1 (82-115)||(15942340-15942373)
chr1 (79-152)||(20791772-20791845)
chr1 (77-118)||(28870462-28870503)
chr1 (78-151)||(32602976-32603049)
chr1 (77-117)||(3161024-3161064)
[»] chr7 (3 HSPs)
chr7 (78-133)||(31740618-31740673)
chr7 (85-143)||(42967964-42968022)
chr7 (77-131)||(44235292-44235346)
[»] chr4 (4 HSPs)
chr4 (78-133)||(30802463-30802518)
chr4 (78-160)||(47789319-47789401)
chr4 (76-120)||(2103186-2103230)
chr4 (78-118)||(30070330-30070370)
[»] chr3 (3 HSPs)
chr3 (81-160)||(43822713-43822792)
chr3 (80-117)||(20873056-20873093)
chr3 (78-133)||(18084855-18084910)
[»] chr5 (2 HSPs)
chr5 (78-150)||(34640215-34640287)
chr5 (77-117)||(31812165-31812205)
[»] chr8 (1 HSPs)
chr8 (78-120)||(12524593-12524635)
[»] chr2 (1 HSPs)
chr2 (77-159)||(21938074-21938156)


Alignment Details
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 319 - 440
Target Start/End: Original strand, 13692799 - 13692920
Alignment:
Q  319 ccatgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgatagagaaaggagtaaaggtt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13692799 ccatgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgatagagaaaggagtaaaggtt 13692898  T
Q  419 acactcataactgtttattcat 440  Q
    ||| | ||||||||||||||||    
T  13692899 acattgataactgtttattcat 13692920  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 13692576 - 13692759
Alignment:
Q  98 aattcaattagctaacttatctgatatcacctataacctaacttataagtcatccgttataagtctatttatcaattatctgctattttttacaaacaag 197  Q
    ||||| || |||||||||||||  ||||| ||||||  |||||||||||||||||| |||||    | |||||||||||| |||||||||||| ||| ||    
T  13692576 aattctatcagctaacttatctactatcaactataaattaacttataagtcatccgctataaactaacttatcaattatccgctattttttactaaccag 13692675  T
Q  198 g--cactatgtccaagcacaattgtttggtttccgtaggtatatgtatatgtaactaaagtgcatagatgtattttgttaggaa 279  Q
       |||| ||||||||| |||||||||| |||  | | ||||||||||||||||||||||| |||||||||||||| |||||||    
T  13692676 agccactgtgtccaagcgcaattgtttgttttgtggatgtatatgtatatgtaactaaagtacatagatgtattttattaggaa 13692759  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 327 - 429
Target Start/End: Original strand, 13686346 - 13686448
Alignment:
Q  327 ctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgatagagaaaggagtaaaggttacactcat 426  Q
    |||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||||||||||| | ||||| ||    
T  13686346 ctcactgtctcatcttaccttatccagcacaaggccacatgaaccctatgattcaattctcaaaacgtttaatagagaaaggagtaaagataacactaat 13686445  T
Q  427 aac 429  Q
    |||    
T  13686446 aac 13686448  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 321 - 423
Target Start/End: Complemental strand, 13673575 - 13673473
Alignment:
Q  321 atgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgattcaattctcaaagcgtttgatagagaaaggagtaaaggttac 420  Q
    ||||||||||||||||||||||||||| |||||  ||||| || |||||||||||||||||||||||||| ||||||||  | ||||||||||| |||||    
T  13673575 atgtagctcactgtctgatcttaccttttccaggtcaaggtcacatgaatcctatgattcaattctcaaaacgtttgatccataaaggagtaaaagttac 13673476  T
Q  421 act 423  Q
    |||    
T  13673475 act 13673473  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 42747731 - 42747813
Alignment:
Q  79 aattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatccgttataagt 161  Q
    ||||||||||||||||| ||||||||||| ||| ||||||   ||||| |||||| ||| ||||||||||||| | |||||||    
T  42747731 aattttaccaaacactacaaattcaattaactagcttatcctctatcagctataaactagcttataagtcatcagctataagt 42747813  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 5923888 - 5923930
Alignment:
Q  76 attaattttaccaaacactaaaaattcaattagctaacttatc 118  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  5923888 attaattttaccaaacactaaaaattcaatcagctagcttatc 5923930  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 21516539 - 21516465
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatcc 152  Q
    |||||||||||||||| | ||||||||| ||||| ||||||   ||||| |||||| ||| ||||||||||||||    
T  21516539 taattttaccaaacacaacaaattcaatcagctagcttatccactatcatctataagctagcttataagtcatcc 21516465  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 31117629 - 31117556
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatc 151  Q
    |||||||| ||||||||| ||||||||| ||||| ||||| || | ||| |||||| ||| |||||||||||||    
T  31117629 taattttatcaaacactacaaattcaatcagctagcttatttgctctcaactataagctagcttataagtcatc 31117556  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 15942373 - 15942340
Alignment:
Q  82 tttaccaaacactaaaaattcaattagctaactt 115  Q
    |||||||||||||| |||||||||||||||||||    
T  15942373 tttaccaaacactacaaattcaattagctaactt 15942340  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 20791845 - 20791772
Alignment:
Q  79 aattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatcc 152  Q
    ||||||||||||||||| ||||||| ||||||| |||| |   ||| | |||||| ||| ||||||||||||||    
T  20791845 aattttaccaaacactacaaattcagttagctagcttacccactatgagctataatctagcttataagtcatcc 20791772  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 28870503 - 28870462
Alignment:
Q  77 ttaattttaccaaacactaaaaattcaattagctaacttatc 118  Q
    ||||||||||||||||||||||||||||| | ||| ||||||    
T  28870503 ttaattttaccaaacactaaaaattcaataaactagcttatc 28870462  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 32602976 - 32603049
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatc 151  Q
    ||||||||| |||||||| ||||||||| |||||| ||||  | ||||  ||||||  ||||||||||||||||    
T  32602976 taattttactaaacactacaaattcaatcagctaatttattcgctatcggctataagttaacttataagtcatc 32603049  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 3161024 - 3161064
Alignment:
Q  77 ttaattttaccaaacactaaaaattcaattagctaacttat 117  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  3161024 ttaattttaccaaacactacaaattcaatcagctagcttat 3161064  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 31740618 - 31740673
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataa 133  Q
    |||||||||||||||||  ||||||||| |||||||||||||| ||||| ||||||    
T  31740618 taattttaccaaacactgcaaattcaataagctaacttatctgctatcatctataa 31740673  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 42967964 - 42968022
Alignment:
Q  85 accaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttat 143  Q
    |||||||| || |||||||||  |||| |||||||| |||||||||||| |||||||||    
T  42967964 accaaacattacaaattcaatcggctagcttatctgctatcacctataagctaacttat 42968022  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 44235346 - 44235292
Alignment:
Q  77 ttaattttaccaaacactaaaaattcaattagctaacttatctgatatcacctat 131  Q
    |||| |||||||||||||| ||||| ||| |||||||||||||| ||||| ||||    
T  44235346 ttaactttaccaaacactacaaattaaatcagctaacttatctgctatcaactat 44235292  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 30802463 - 30802518
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataa 133  Q
    |||||||||||||||||| ||||||||| |||||||||||| | ||||| ||||||    
T  30802463 taattttaccaaacactacaaattcaataagctaacttatccgctatcatctataa 30802518  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 47789401 - 47789319
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatccgttataag 160  Q
    |||||||||||||||||| ||| ||||| || || |||||| | ||||| ||| |||||  ||||||||||||| ||||||||    
T  47789401 taattttaccaaacactacaaaatcaatcagttagcttatccgctatcagctacaacctggcttataagtcatctgttataag 47789319  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 2103230 - 2103186
Alignment:
Q  76 attaattttaccaaacactaaaaattcaattagctaacttatctg 120  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  2103230 attaattttaccaaacactacaaattcaataagctagcttatctg 2103186  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 30070330 - 30070370
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatc 118  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  30070330 taattttaccaaacactacaaattcaattagctagcttatc 30070370  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 43822713 - 43822792
Alignment:
Q  81 ttttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatccgttataag 160  Q
    ||||||||||||||  |||||||||||||||  ||||| | ||||| |||||| ||| ||||| ||||||||| ||||||    
T  43822713 ttttaccaaacacttcaaattcaattagctagtttatccgctatcagctataagctagcttatcagtcatccgctataag 43822792  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 20873093 - 20873056
Alignment:
Q  80 attttaccaaacactaaaaattcaattagctaacttat 117  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20873093 attttaccaaacactaaaaattcaataagctaacttat 20873056  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 18084910 - 18084855
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataa 133  Q
    |||||||||||||||||  ||||||||| |||||||||||| | ||||| ||||||    
T  18084910 taattttaccaaacactgcaaattcaatcagctaacttatccgctatcatctataa 18084855  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 34640215 - 34640287
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcat 150  Q
    ||||||||||||||| || ||||||||| ||||| |||||| | ||||| |||||| ||| |||||| |||||    
T  34640215 taattttaccaaacattacaaattcaataagctagcttatccgctatcagctataagctagcttataggtcat 34640287  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 31812165 - 31812205
Alignment:
Q  77 ttaattttaccaaacactaaaaattcaattagctaacttat 117  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  31812165 ttaattttaccaaacactacaaattcaatcagctagcttat 31812205  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 12524635 - 12524593
Alignment:
Q  78 taattttaccaaacactaaaaattcaattagctaacttatctg 120  Q
    |||||||||||||||||| ||||||||| |||||| |||||||    
T  12524635 taattttaccaaacactacaaattcaatcagctaaattatctg 12524593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 21938074 - 21938156
Alignment:
Q  77 ttaattttaccaaacactaaaaattcaattagctaacttatctgatatcacctataacctaacttataagtcatccgttataa 159  Q
    |||||||||| |||||||  ||||||||| | |||| |||| |   |||| |||||| ||||||||||||||||| |||||||    
T  21938074 ttaattttactaaacactgcaaattcaatcaactaatttatttatcatcaactataaactaacttataagtcatctgttataa 21938156  T

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