View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8450_low_5 (Length: 448)
Name: NF8450_low_5
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_low_5 |
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| [»] scaffold0110 (4 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 3 - 433
Target Start/End: Original strand, 30213 - 30643
Alignment:
| Q |
3 |
tggagtagcagagagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgat |
102 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30213 |
tggattagcagtgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgat |
30312 |
T |
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| Q |
103 |
ttcatcaaacttgatgtgattcttattatgcactaagtggtttatttaatttgttcttctgatgtttttatcttgtggtgatgattctggnnnnnnnagg |
202 |
Q |
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| T |
30313 |
ttcgtcaaacttgatgtgattcttattatgcactaagtggtttattcaatttgttcttctgatgtttttatcttgtggtgatgattctggtttttttagg |
30412 |
T |
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| Q |
203 |
aaaagcaaaagggtaggattggaattttgttggattttgtttggtatgaacctcttacaagatcaaaggctgataactatgctgctcaaagagctagaga |
302 |
Q |
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| T |
30413 |
aaaagcaaaagggtaggattggaattttgttggattttgtttggtatgagcctcttacaagatcaaaggctgataactatgctgctcaaagagctagaga |
30512 |
T |
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| Q |
303 |
ctttcatattggatggtaaaaattgttggcttttctagttgaaacaacgccagaagaattgtacctaagttttgtcattttgttaattttgtagtgtgtt |
402 |
Q |
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| T |
30513 |
ctttcatattggatggtaaaaattgttggcttttctagttgaaacaacgccagaagaattgtacctaagttttgtcattttgttaatttcgtagtgtgtt |
30612 |
T |
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| Q |
403 |
ttaagttgtttataaatttccacaggttcat |
433 |
Q |
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| T |
30613 |
ttaagttgtttataaatttccacaggttcat |
30643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 200 - 334
Target Start/End: Original strand, 22054 - 22188
Alignment:
| Q |
200 |
aggaaaagcaaaagggtaggattggaattttgttggattttgtttggtatgaacctcttacaagatcaaaggctgataactatgctgctcaaagagctag |
299 |
Q |
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| T |
22054 |
aggaaaaacaaaagggtagtattggaattttgttggatttagtttggtatgagtctcttacaagatcaaaggctgataactatgctgctcaaagagctag |
22153 |
T |
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| Q |
300 |
agactttcatattggatggtaaaaattgttggctt |
334 |
Q |
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| T |
22154 |
agattttcatattggatggtaaaaattgttggctt |
22188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 13399 - 13523
Alignment:
| Q |
15 |
gagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgatttcatcaaactt |
114 |
Q |
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|||||||||| | ||| |||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||| ||||||||||||||||| ||||||| |
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| T |
13399 |
gagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactc |
13498 |
T |
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| Q |
115 |
gatgtgattcttattatgcactaag |
139 |
Q |
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| T |
13499 |
gatttgattttcatcatgcactaag |
13523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 21136 - 21260
Alignment:
| Q |
15 |
gagtttgtcagagtcatgatgtgccatagtgatttcggcaaaaactacactttgccgcttcaacaaagtcacatggtgcaactgtgatttcatcaaactt |
114 |
Q |
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| T |
21136 |
gagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactc |
21235 |
T |
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| Q |
115 |
gatgtgattcttattatgcactaag |
139 |
Q |
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||| ||||| | || |||||||||| |
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| T |
21236 |
gatttgattttcatcatgcactaag |
21260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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