View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8450_low_7 (Length: 402)
Name: NF8450_low_7
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 39985422 - 39985789
Alignment:
| Q |
18 |
gggtttgcaatggaggaagggtcaccgatgacaccaaaccagaaagactctaggttcagcgacttcaagacaaggagggcatacttctattgggtgacaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39985422 |
gggtttgcaatggaggaagggtcaccgatgacaccaaaccagaaagactctaggttcagtgacttcaagacaaggagggcatacttctattgggtgacaa |
39985521 |
T |
|
| Q |
118 |
gagagcagggttcctttgattggtttaaaggggtgatgaatgatgtagctgaggaggatagaaggggattgattgagctacacagctactgcaccagcgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39985522 |
gagagcagggttcctttgattggtttaaaggggtgatgaatgatgtacctgaggaggatagaaggggattgattgagctacacagctactgcaccagtgt |
39985621 |
T |
|
| Q |
218 |
ttacgaacagggtgatgctcgctctgctcttatcgctatggtgcagtctataaaccatgcaaagcacggtgtggatgttgtttccggcactcgtgtcatg |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
39985622 |
ttacgaacagggtgatgcacgctctgctcttatcgctatggtgcagtctataaaccatgcaaagcacggggtggatgttgtgtccggcactcgtgtcatg |
39985721 |
T |
|
| Q |
318 |
tctcattttgctaaacccaattggcgcactgtctacaaacgcattgcacttaatcatccggaagcaca |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39985722 |
tctcattttgctaaacccaattggcgcactgtctacaaacgcattgcacttaatcatccggaagcaca |
39985789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 41558713 - 41558781
Alignment:
| Q |
102 |
ttctattgggtgacaagagagcagggttcctttgattggtttaaaggggtgatgaatgatgtagctgag |
170 |
Q |
| |
|
||||| ||||| ||||||||||| || || ||||||||||| ||||| || |||||||| ||||||||| |
|
|
| T |
41558713 |
ttctactgggttacaagagagcaaggctcttttgattggttcaaaggagtcatgaatgaagtagctgag |
41558781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 108 - 376
Target Start/End: Original strand, 44917851 - 44918119
Alignment:
| Q |
108 |
tgggtgacaagagagcagggttcctttgattggtttaaaggggtgatgaatgatgtagctgaggaggatagaaggggattgattgagctacacagctact |
207 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||||||||| || |||||||| || ||||| || ||| |||||| | ||||||||||||| || | |
|
|
| T |
44917851 |
tgggttactagagaacagggttcatttgattggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgagctacacaattatt |
44917950 |
T |
|
| Q |
208 |
gcaccagcgtttacgaacagggtgatgctcgctctgctcttatcgctatggtgcagtctataaaccatgcaaagcacggtgtggatgttgtttccggcac |
307 |
Q |
| |
|
| || || ||||| ||| ||||||||||||||||||||||||| |||||| | || || | || ||||| || | ||||||||| | || || || || |
|
|
| T |
44917951 |
gtactagtgtttatgaagagggtgatgctcgctctgctcttattgctatgctccaatcacttaatcatgctaaaaatggtgtggatatcgtctctggaac |
44918050 |
T |
|
| Q |
308 |
tcgtgtcatgtctcattttgctaaacccaattggcgcactgtctacaaacgcattgcacttaatcatcc |
376 |
Q |
| |
|
|| |||| |||||| ||||||||||| |||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
44918051 |
acgcgtcaagtctcactttgctaaacctaattggcgtagtgtctacaagcgcattgcacttaatcatcc |
44918119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 44901305 - 44901369
Alignment:
| Q |
312 |
gtcatgtctcattttgctaaacccaattggcgcactgtctacaaacgcattgcacttaatcatcc |
376 |
Q |
| |
|
|||| |||||| ||||||| ||| || ||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
44901305 |
gtcaagtctcactttgctagaccaaaatggtgcagcgtctacaagcgcattgcacttaatcatcc |
44901369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 37068513 - 37068577
Alignment:
| Q |
102 |
ttctattgggtgacaagagagcagggttcctttgattggtttaaaggggtgatgaatgatgtagc |
166 |
Q |
| |
|
||||||||||| || | ||||| ||||| ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
37068513 |
ttctattgggttactcgtgagcaaggttcgtttgaatggtttaaaggtgtgatgaatgaggtagc |
37068577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University