View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8450_low_8 (Length: 355)
Name: NF8450_low_8
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 47237210 - 47237547
Alignment:
| Q |
1 |
atttaagatatattgtagatagccttactttacatttgcaaaaggctgattccacaactcaaatccaacgacaacaccaaccattgcaacaagattccca |
100 |
Q |
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| T |
47237210 |
atttaagatatattgtagatagccttactttacatttgcaaaaggctgattccacaactcaaatccaacgacaacaccacccattgcaacaagattccca |
47237309 |
T |
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| Q |
101 |
ttccatataaattcgatattatcactacagtttcctaaaagatcaatagattatctgatactttcttaatataaacaggtgtttcaaagtacttttcatt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47237310 |
ttccatataaattcgatattatcactacactttcctaaaagatcaatagattatctgatactttcttaatataaacaggtgtttcaaagtacttttcatt |
47237409 |
T |
|
| Q |
201 |
attagattagtaaagcattaccactaaggcactaacacagttagcaggttgaaggccacttccttcatttctaggattagattggatcaattttagcctt |
300 |
Q |
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| T |
47237410 |
attagattagtaaagcattaccactaaggcactaacacagttagcaggttgaaggccacttccttcatttctagaattagattggatcaattttagcctt |
47237509 |
T |
|
| Q |
301 |
tcagaattcatctgagactgactcctccatctgagatt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
47237510 |
tcagaattcatctgagactgactcctccatctgagatt |
47237547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 298
Target Start/End: Complemental strand, 3044557 - 3044413
Alignment:
| Q |
148 |
agattatctgatactttcttaatataaacaggtgtttcaaagtacttttcatt------attagattagtaaagcattaccactaaggcactaacacagt |
241 |
Q |
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| T |
3044557 |
agattatttgatactttctcaatataaacaattgtttcaaagtacttttcatttcatttattagattagtgaagcgttaccactaa--------cacagt |
3044466 |
T |
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| Q |
242 |
tagcaggttgaaggccacttccttcatttctaggattagattggatcaattttagcc |
298 |
Q |
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||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3044465 |
tagaaggttcaaggccacttc----atttctaggattagattggatcaattttagcc |
3044413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 1705043 - 1705187
Alignment:
| Q |
148 |
agattatctgatactttcttaatataaacaggtgtttcaaagtacttttcatt------attagattagtaaagcattaccactaaggcactaacacagt |
241 |
Q |
| |
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||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||| | |||| |||||||||| |||||| |
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| T |
1705043 |
agattatttgatattttctcaatataaacagttgtttcaaagtacttttcatttcatttattagattaatgaagcgttaccactaa--------cacagt |
1705134 |
T |
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| Q |
242 |
tagcaggttgaaggccacttccttcatttctaggattagattggatcaattttagcc |
298 |
Q |
| |
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||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
1705135 |
tagaaggttgaaggccacttc----atttctaagattagattggatcaattttagcc |
1705187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 34858896 - 34859040
Alignment:
| Q |
148 |
agattatctgatactttcttaatataaacaggtgtttcaaagtacttttcatt------attagattagtaaagcattaccactaaggcactaacacagt |
241 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| | ||||||||||||||||||| |||| |||||| |||| |||||| ||| |||||| |
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| T |
34858896 |
agattatttgatactttctcaatatatacagttatttcaaagtacttttcatttcatttattaaattagtgaagcgttaccaataa--------cacagt |
34858987 |
T |
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| Q |
242 |
tagcaggttgaaggccacttccttcatttctaggattagattggatcaattttagcc |
298 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34858988 |
tagaaggttgaaggccacttc----atttctaggattagattggatcaattttagcc |
34859040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 298
Target Start/End: Complemental strand, 28968463 - 28968319
Alignment:
| Q |
148 |
agattatctgatactttcttaatataaacaggtgtttcaaagtacttttcatt------attagattagtaaagcattaccactaaggcactaacacagt |
241 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| | ||||||||||||||||||| |||| |||||| |||| |||||| ||| |||||| |
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| T |
28968463 |
agattatttgatactttctcaatatatacagttatttcaaagtacttttcatttcatttattaaattagtgaagcgttaccaataa--------cacagt |
28968372 |
T |
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| Q |
242 |
tagcaggttgaaggccacttccttcatttctaggattagattggatcaattttagcc |
298 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28968371 |
tagaaggttgaaggccacttc----atttctaggattagattggatcaattttagcc |
28968319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 42730638 - 42730702
Alignment:
| Q |
230 |
cactaacacagttagcaggttgaaggccacttccttcatttctaggattagattggatcaattttagcc |
298 |
Q |
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|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42730638 |
cactaacacaactagaaggttgaaggccacttc----atttctaggattagattggatcaattttagcc |
42730702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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