View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8450_low_9 (Length: 329)
Name: NF8450_low_9
Description: NF8450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8450_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 33158679 - 33158951
Alignment:
| Q |
17 |
ggttgttgtgttgagtacacaaggaaagattctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158679 |
ggttgttgtgttgagtacacaaggaaagattctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaa |
33158778 |
T |
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| Q |
117 |
gaagaatcaatgacccaagaactaatgtgggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatctta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
33158779 |
gaagaatcaatgacccaagaactaatgtgggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcgtaaatttta |
33158878 |
T |
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| Q |
217 |
taaaaccttttattatgttcaaaactc--atatattatgatttttcttatgaatctaattaacatgtactaat |
287 |
Q |
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| T |
33158879 |
taaaatctcttattacaatgaaaactcttacatatcatgataatttttatgaatttaattaccatgtactaat |
33158951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 33181522 - 33181794
Alignment:
| Q |
17 |
ggttgttgtgttgagtacacaaggaaagattctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaa |
116 |
Q |
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| T |
33181522 |
ggttgttgtgttgagtacacaaggaaagattctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaa |
33181621 |
T |
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| Q |
117 |
gaagaatcaatgacccaagaactaatgtgggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatctta |
216 |
Q |
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| T |
33181622 |
gaagaatcaatgacccaagaactaatgtgggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcgtaaatttta |
33181721 |
T |
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| Q |
217 |
taaaaccttttattatgttcaaaactc--atatattatgatttttcttatgaatctaattaacatgtactaat |
287 |
Q |
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| T |
33181722 |
taaaatctcttattacaatgaaaactcttacatatcatgataatttttatgaatttaattaccatgtactaat |
33181794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 33140334 - 33140536
Alignment:
| Q |
19 |
ttgttgtgttgagtacacaaggaaagattctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaaga |
118 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||| | ||||| ||||||| |
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| T |
33140334 |
ttgttgtgttgagcccacaaggaaagattctgcatcataatgcattccatatgattcaggtttggggagtaaagggcttcccttactccaaatccaaaga |
33140433 |
T |
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| Q |
119 |
agaatcaatgacccaagaactaatgtgggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatcttata |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||| |||||| || ||| | || |||||||||||| | |
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| T |
33140434 |
agaatcaatgacccaagaattaatgtgggttgattccctgctggctgacattgatataaagattaaatgggtacgtatttcgctgatcataaatcttaaa |
33140533 |
T |
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| Q |
219 |
aaa |
221 |
Q |
| |
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||| |
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| T |
33140534 |
aaa |
33140536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 33287970 - 33287772
Alignment:
| Q |
17 |
ggttgttgtgttgagtacacaaggaaagattctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaa |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| || |||| |||| || |||| |
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| T |
33287970 |
ggttgttgtgttgagcccacaaggaaagattctgcatcataatgcattccatatgattcaagtttggggggtaaagggttttccttacaccgaagacaaa |
33287871 |
T |
|
| Q |
117 |
gaagaatcaatgacccaagaactaatgtgggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatctt |
215 |
Q |
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||| ||||||| ||||| ||| ||| |||||||| |||| || |||||| |||||||||| ||||||| ||||||||| ||| | |||||| ||||||| |
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| T |
33287870 |
gaaaaatcaataacccaggaattaaagtgggttgtttccttgttggttgacattgatatacagattaaatgggtaagtattttgctggtcacaaatctt |
33287772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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