View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8451_high_3 (Length: 407)
Name: NF8451_high_3
Description: NF8451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8451_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 55871342 - 55871711
Alignment:
| Q |
20 |
ttcttcctgcaaatattattttcagttaatacacatacatacatgctttgatatattatatgttaatgcatgtgtgtataatagagagtgagaagagaaa |
119 |
Q |
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| T |
55871342 |
ttcttcctgcaaatgttattttcagttaatacacatacatacatgctttgatatattatatgttaatgcatgtgtgtataatagagagtgagaagagaaa |
55871441 |
T |
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| Q |
120 |
atgtacctatgttagagcacttgttttcaccatttctgcaatcaaccgcgttcaaattaaacataaacccgagaagagaagtgaagaacactaggtaaaa |
219 |
Q |
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| T |
55871442 |
atgtacctatgttagagcacttgttttcaccatttctgcaatcaactgcgttcaaattaaacataaacccgagaagagaagtgaagaacactaggtaaaa |
55871541 |
T |
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| Q |
220 |
aatcactttgatgaatttcctcaaccttattcctggtggaagtaaatgcctcaaatatgttgatagctttaacagcattttgtacaaacgcaaaaacagc |
319 |
Q |
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| T |
55871542 |
aatcactttgatgaatttcctcaaccttattcctggtggaactaaatgcctcaaatatgttgatagctttaacagcattttgtacaaacgcaaaaacagc |
55871641 |
T |
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| Q |
320 |
accgctaatacttctcttcaaaggatttagtactaatttccttgattaggcaagtcaccacctgatcaac |
389 |
Q |
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| T |
55871642 |
accgctaatacttctcttcaaaggatttagtactaatttccttgattaggcaagtcaccacctgatcaac |
55871711 |
T |
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