View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8451_high_6 (Length: 240)
Name: NF8451_high_6
Description: NF8451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8451_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 35057378 - 35057579
Alignment:
| Q |
18 |
agacaacgacgacaaaattctgattcgtttttagtttggttaggagaaggtgactctgtttatgacctactaaagacgaggttccttcatggcttgggcg |
117 |
Q |
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| T |
35057378 |
agacaacgacgacaaaattctgattcgtttttagtttggttaggagaaggtgactctgtttatgacctactaaagacgaggttccttcatggcttgggcg |
35057477 |
T |
|
| Q |
118 |
ctctttcgagcaaagctgagattattgctattcaaagaaacgcgtgttctgacgccgtttcacaggcgcggcttcgatcctttcttgtttatgcagaagc |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35057478 |
ctctttcgagcaaagctgagattcttgctattcaaagaaacgcatgttctgacgccgtttcacaggcgcggcttcgatcctttcttgtttatgcagaagc |
35057577 |
T |
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| Q |
218 |
tg |
219 |
Q |
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|| |
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| T |
35057578 |
tg |
35057579 |
T |
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