View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8451_high_7 (Length: 239)

Name: NF8451_high_7
Description: NF8451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8451_high_7
NF8451_high_7
[»] chr7 (1 HSPs)
chr7 (1-223)||(33885427-33885649)
[»] chr4 (4 HSPs)
chr4 (26-104)||(21952933-21953011)
chr4 (62-101)||(6978972-6979011)
chr4 (60-104)||(29467631-29467675)
chr4 (60-104)||(35507464-35507508)
[»] chr3 (2 HSPs)
chr3 (55-103)||(27290909-27290957)
chr3 (58-104)||(31403164-31403210)
[»] chr2 (3 HSPs)
chr2 (26-102)||(31739981-31740057)
chr2 (26-63)||(1160805-1160842)
chr2 (28-56)||(11307286-11307314)
[»] chr1 (3 HSPs)
chr1 (58-104)||(20713673-20713719)
chr1 (27-104)||(44936610-44936687)
chr1 (76-104)||(11639423-11639451)
[»] scaffold0153 (2 HSPs)
scaffold0153 (26-63)||(6559-6596)
scaffold0153 (26-63)||(13579-13616)
[»] chr8 (1 HSPs)
chr8 (76-104)||(43168517-43168545)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33885649 - 33885427
Alignment:
Q  1 aataagtcaattcaatcaagccaataataaagtcaaactattttcataaaagctattagctatcctaaagagttcatgaaaataagctaaaaacagctta 100  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33885649 aataagtcaattcaatcaagataataataaagtcaaactattttcataaaagctattagctatcctaaagagttcatgaaaataagctaaaaacagctta 33885550  T
Q  101 tggaaatggtacaactaccatacctattaaaggttccttaacaacaaaatgaagtttatagtcatcaccaccaccattcacccatgaaagacaagactca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33885549 tggaaatggtacaactaccatacctattaaaggttccttaacaacaaaatgaagtttatagtcatcaccaccaccattcacccatgaaagacaagactca 33885450  T
Q  201 catccacaatcagaccaactttt 223  Q
    |||||||||||||||||||||||    
T  33885449 catccacaatcagaccaactttt 33885427  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 21952933 - 21953011
Alignment:
Q  26 aataaagtcaaactattttcataaaagctattagctatcctaaagagttcatgaaaataagctaaaaacagcttatgga 104  Q
    |||||||||||| | |||||||| ||||||| |||||||||| |||| | | | |||||| |||||||||| |||||||    
T  21952933 aataaagtcaaattgttttcatataagctataagctatcctatagagcttaaggaaataaactaaaaacaggttatgga 21953011  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 6979011 - 6978972
Alignment:
Q  62 atcctaaagagttcatgaaaataagctaaaaacagcttat 101  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  6979011 atcctaaagagtttatgaaaataagctgaaaacagcttat 6978972  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 29467675 - 29467631
Alignment:
Q  60 ctatcctaaagagttcatgaaaataagctaaaaacagcttatgga 104  Q
    |||||||| |||||| ||| ||||||||| |||||||||||||||    
T  29467675 ctatcctagagagtttatggaaataagctgaaaacagcttatgga 29467631  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 35507508 - 35507464
Alignment:
Q  60 ctatcctaaagagttcatgaaaataagctaaaaacagcttatgga 104  Q
    ||||||||||||| | |||||| ||||||||||| ||||||||||    
T  35507508 ctatcctaaagagcttatgaaagtaagctaaaaatagcttatgga 35507464  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 27290957 - 27290909
Alignment:
Q  55 attagctatcctaaagagttcatgaaaataagctaaaaacagcttatgg 103  Q
    ||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  27290957 attagctatcctgcagagttcatggaaataagctgaaaacagcttatgg 27290909  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 31403164 - 31403210
Alignment:
Q  58 agctatcctaaagagttcatgaaaataagctaaaaacagcttatgga 104  Q
    |||||||||| ||||||||||  |||||||| |||||||||||||||    
T  31403164 agctatcctagagagttcatggtaataagctgaaaacagcttatgga 31403210  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 31740057 - 31739981
Alignment:
Q  26 aataaagtcaaactattttcataaaagctattagctatcctaaagagttcatgaaaataagctaaaaacagcttatg 102  Q
    ||||||||||||||||||||||| ||||||| || | | ||| |||| | ||| |||||| || |||||||||||||    
T  31740057 aataaagtcaaactattttcatataagctataagttgttctagagagcttatggaaataatctgaaaacagcttatg 31739981  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 1160842 - 1160805
Alignment:
Q  26 aataaagtcaaactattttcataaaagctattagctat 63  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  1160842 aataaagtcaaactattttcatataagctataagctat 1160805  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 11307286 - 11307314
Alignment:
Q  28 taaagtcaaactattttcataaaagctat 56  Q
    |||||||||||||||||||||||||||||    
T  11307286 taaagtcaaactattttcataaaagctat 11307314  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 20713673 - 20713719
Alignment:
Q  58 agctatcctaaagagttcatgaaaataagctaaaaacagcttatgga 104  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||||    
T  20713673 agctatactaaagagcttatgaaaataagataaaaacagcttatgga 20713719  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 44936687 - 44936610
Alignment:
Q  27 ataaagtcaaactattttcataaaagctattagctatcctaaagagttcatgaaaataagctaaaaacagcttatgga 104  Q
    |||||||||||||||||||||| ||||||| | ||||| | ||||| | ||| ||||| ||  |||||||| ||||||    
T  44936687 ataaagtcaaactattttcatataagctataatctatcttgaagagcttatggaaataggcagaaaacagcatatgga 44936610  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 11639451 - 11639423
Alignment:
Q  76 atgaaaataagctaaaaacagcttatgga 104  Q
    |||||||||||||||||||||||||||||    
T  11639451 atgaaaataagctaaaaacagcttatgga 11639423  T

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Target: scaffold0153 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 6596 - 6559
Alignment:
Q  26 aataaagtcaaactattttcataaaagctattagctat 63  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  6596 aataaagtcaaactattttcatataagctataagctat 6559  T

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Target: scaffold0153; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 13616 - 13579
Alignment:
Q  26 aataaagtcaaactattttcataaaagctattagctat 63  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  13616 aataaagtcaaactattttcatataagctataagctat 13579  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 43168545 - 43168517
Alignment:
Q  76 atgaaaataagctaaaaacagcttatgga 104  Q
    |||||||||||||||||||||||||||||    
T  43168545 atgaaaataagctaaaaacagcttatgga 43168517  T

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