View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8451_low_12 (Length: 237)
Name: NF8451_low_12
Description: NF8451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8451_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 36947797 - 36947661
Alignment:
| Q |
77 |
cattgctcctttgggattcttcatgttcttgttcaatatagactagtgctgctgatcttcttggacttcgctttgcaccagcagatttaagtgcaatact |
176 |
Q |
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| T |
36947797 |
cattgctcctttgggattcttcatgctcttgttcaatatagactagtgctgctgatcttcttggacttcgctttgcaccagcagatttaagtgcaatact |
36947698 |
T |
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| Q |
177 |
tgtaagacgctgcaaacattgttacaatattacatct |
213 |
Q |
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| T |
36947697 |
tgtaagacgctgcaaacattgttacaatattacatct |
36947661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 36971396 - 36971331
Alignment:
| Q |
148 |
tttgcaccagcagatttaagtgcaatacttgtaagacgctgcaaacattgttacaatattacatct |
213 |
Q |
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| T |
36971396 |
tttgcaccagcagattcaagtgccatacttgtaagacgctgcaaacattgttacaatattacatct |
36971331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 36955836 - 36955781
Alignment:
| Q |
141 |
acttcgctttgcaccagcagatttaagtgcaatacttgtaagacgctgcaaacatt |
196 |
Q |
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| T |
36955836 |
acttcgctttgcaccagcagatttaagtgcagtccatgtgagaagctgcaaacatt |
36955781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 12493893 - 12493943
Alignment:
| Q |
150 |
tgcaccagcagatttaagtgcaatacttgtaagacgctgcaaacattgtta |
200 |
Q |
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| T |
12493893 |
tgcaccagcagatttaagtgcaatccatgtaagatgctgcaaacattgtta |
12493943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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