View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8451_low_2 (Length: 413)
Name: NF8451_low_2
Description: NF8451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8451_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 13605455 - 13605835
Alignment:
| Q |
17 |
aaatttctgagtcttgtggggttgaaagcccttcttctgatgttctcattatgatcataagtttgttgtcttctatgtggttgtaatggaaaactgcaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13605455 |
aaatttctgagtcttgtggggttgaaagcccttcttctcatgttctcattgtgattataagtttgttgtcttctatgtggttgtaatggaaaactgcaaa |
13605554 |
T |
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| Q |
117 |
ttattcaaaaattataataagttcatgtaattaaatagaacgctcctttgctgaaaaacaatatttggaggaacgatattactataaaaaatcgagatct |
216 |
Q |
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| T |
13605555 |
ttattcaaaaattataataagttcatgtaattaaatagaacgctcctttgctgaaaaacaatatttggaggaacgatattactataaaaaatcgagatct |
13605654 |
T |
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| Q |
217 |
cattatcatggtgtgttcctttttcatccttgagaatgccagtttcattgtttatttatttaccaactgaaaacatgttatgaaatcctgaatttgtagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13605655 |
cattatcatggtgtgttcctttttcatccttgagaatgccagtttcattgtttatttatttaccaactgaaaacatgttatgaaatcctgaatttgtagg |
13605754 |
T |
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| Q |
317 |
aatctttttcagtgttatatcaatcaaatacttttaaattctctaaaatttaaagcaattgaaacaaacatctatatatat |
397 |
Q |
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| T |
13605755 |
aatctttttcagtgttatatcaatcaaatacttttaaattctctaaaatttaaagcaattgaaacaaacatctatatatat |
13605835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 31201333 - 31201582
Alignment:
| Q |
22 |
tctgagtcttgtggggttgaaagcccttcttctgatgttctcattatgatcataagtttgttgtcttctatgtggttgtaatggaaaactgcaaattatt |
121 |
Q |
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| T |
31201333 |
tctgattcttgtggggttgtagccccttcttctcatgtcctcattgtgattataagtttgttgtcttctatgtggttgtaatggaaaactgcaaattgtt |
31201432 |
T |
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| Q |
122 |
caaaaattataataagttcatgtaattaaatagaacgctcctttgctgaaaaacaatatttggaggaacgatattacta-taaaaaatcgagatctcatt |
220 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||| | |||||||||| |
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| T |
31201433 |
caaaaattataataagttcatgtaactaaatagaacactcctttgctgaaaaacaatatttggaagaactatattactacaaaaaaaccaagatctcatt |
31201532 |
T |
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| Q |
221 |
atcatggtgtgttcctttttcatccttgagaatgccagtttcattgttta |
270 |
Q |
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| T |
31201533 |
atcatggtgtgttcctttttcatccttgagaataccagtttcattgttta |
31201582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 31213882 - 31214161
Alignment:
| Q |
27 |
gtcttgtggggttgaaagcccttcttctgatgttctcattatgatcataagtttgttgtcttctatgtggttgtaatggaaaactgcaaattattcaaaa |
126 |
Q |
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| T |
31213882 |
gtcttgtggggttgaaaccccttcttctcatatcctcattgtgattataagtttgtgg----------ggttgtactggaaaactgcaaattgtt-aaaa |
31213970 |
T |
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| Q |
127 |
attataataagttcatgtaattaaatagaacgctccttt-----gctgaaaaacaatatttggaggaacgatatta---ctataaaaaatcgagatctca |
218 |
Q |
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| T |
31213971 |
attataataattt-atgtaactaaatagaacactcctttaatttgctgaaaaacaatatttggaagaaatatattagtactacaaaaaatcaagatctca |
31214069 |
T |
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| Q |
219 |
ttatcatggtgtgttcctttttcatcc---------ttgagaatgccagtttcattgtttatttatttaccaactgaaaacatgttatgaaa |
301 |
Q |
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| T |
31214070 |
ttatcatggtgtgttcctttttcatcctcttgagagttgagaataccagtttcattgtttatttatttaccagctgaaaacatgttatgaaa |
31214161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 31201591 - 31201652
Alignment:
| Q |
335 |
atcaatcaaatacttttaaattctctaaaatttaaagcaattgaaacaaacatctatatata |
396 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31201591 |
atcaatcaaatacttttaaattctcaaaaatttaaagcaattgaaacaaacatctatatata |
31201652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 31214311 - 31214355
Alignment:
| Q |
352 |
aaattctctaaaatttaaagcaattgaaacaaacatctatatata |
396 |
Q |
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| T |
31214311 |
aaattctctaaaatttaaatcaattgaaacaaacatctatatata |
31214355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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