View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8451_low_3 (Length: 407)
Name: NF8451_low_3
Description: NF8451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8451_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 7778774 - 7778901
Alignment:
| Q |
201 |
ctttcattagtttgcatcaaagcacgcgtatcaaagcataatgagtggttttttatttatctttaaatataaaaaagaaaccaacctttgagtgaaacca |
300 |
Q |
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| T |
7778774 |
ctttcattagtttgcatcaaagcacgcgtatcaaagcataatgagtggttttttatttatctttaaatataaaaaagaaaccaacctttgagtgaaacca |
7778873 |
T |
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| Q |
301 |
ctcatcacatcacactctgaaacagtgc |
328 |
Q |
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| T |
7778874 |
ctcatcacatcacactctgaaacagtgc |
7778901 |
T |
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Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7778574 - 7778659
Alignment:
| Q |
1 |
aaaacaagaacaagggtccattttgatcatcatcattaatattcttaaattcttaacatgagaatctcattttgttgtttgtctaa |
86 |
Q |
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| T |
7778574 |
aaaacaagaacaagggtccattttgatcatcatcattaatattcttaaattcttaacatgagaatctcattttgttgtttgtctaa |
7778659 |
T |
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