View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8451_low_6 (Length: 309)

Name: NF8451_low_6
Description: NF8451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8451_low_6
NF8451_low_6
[»] chr6 (1 HSPs)
chr6 (19-309)||(32572482-32572772)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 32572772 - 32572482
Alignment:
Q  19 taaaacaacaatgacattgggatatagtacctttattaaaataagaaatactaacttaaagcaatggaattgtttcattgcagggtaaagttgcagataa 118  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32572772 taaaacagcaatgacattgggacagagtacctttattaaaataagaaatactaacttaaagcaatggaattgtttcattgcagagtaaagttgcagataa 32572673  T
Q  119 aagacagtattaagtggcctaagtatcattcattactaggactatcgttggcttcatgattaattggtgcagcacctttgaaaggaaacattgtagcggc 218  Q
    |||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  32572672 aagacaatattaagtggcctaagtatcattcattattaagactgtcgttggcttcatgattagttggtgcagcaccttcgaaaggaaacattgtagcggc 32572573  T
Q  219 agcaatattgtacccactaagttgaagaagatcatgaagttttggtagcggtggagatatttgaaattcaccaatactaggaacagcttga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32572572 agcaatattgtacccactaagttgaagaagatcatgaagttttggtagtggtggagatatttgaaattcaccaatactaggaacagcttga 32572482  T

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