View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8452_high_1 (Length: 614)

Name: NF8452_high_1
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8452_high_1
NF8452_high_1
[»] chr5 (2 HSPs)
chr5 (120-605)||(2591562-2592056)
chr5 (18-71)||(2591465-2591518)
[»] chr8 (3 HSPs)
chr8 (120-216)||(41350367-41350463)
chr8 (123-192)||(5948223-5948292)
chr8 (123-192)||(5983836-5983905)
[»] chr4 (1 HSPs)
chr4 (151-188)||(53557726-53557763)
[»] chr1 (1 HSPs)
chr1 (154-187)||(38707210-38707243)
[»] chr7 (1 HSPs)
chr7 (136-188)||(44676854-44676906)


Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 120 - 605
Target Start/End: Original strand, 2591562 - 2592056
Alignment:
Q  120 atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2591562 atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaagtca 2591661  T
Q  220 tcttcttctgctcctaatttatcaacaccaactattgatcatcatcatcctcagttgatcaattatagttccattaatcaactagataattactttacca 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2591662 tcttcttctgctcctaatttatcaacaccaactattgatcatcatcatcctcagttgatcaattatagttccattaatcaactagataattactttacca 2591761  T
Q  320 accaagaaaatgtaacaacaaaagaaaccttattttcatcaacatgtcctttatttatgtttgacacaagttcactgcatgaaacaacagcaacagacac 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2591762 accaagaaaatgtaacaacaaaagaaaccttattttcatcaacatgtcctttatttatgtttgacacaagttcactgcatgaaacaacagcaacagacac 2591861  T
Q  420 caatgtaataagaccagaagtactattccatcatgattctgtgagtttgagttctgacacatggaacttgaatcaccatgat---------catcatcaa 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  2591862 caatgtaataagaccagaagtactattccatcatgattctgtgagtttgagttctgacacatggaacttgaatcaccatgatcatcatcaacatcatcaa 2591961  T
Q  511 gttcagacacttcctcctcatccagctgcaatagcttttacaacaattcatgatactagtaattataatcttccaccattgatagagaataatgt 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2591962 gttcagacacttcctcctcatccagctgcaatagcttttacaacaattcatgatactagtaattataatcttccaccattgatagagaataatgt 2592056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 2591465 - 2591518
Alignment:
Q  18 atgtatgcttataaatcacggttttatttttatttaagaatcttaattacaaag 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2591465 atgtatgcttataaatcacggttttatttttatttaagaatcttaattacaaag 2591518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 41350463 - 41350367
Alignment:
Q  120 atgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaag 216  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || || |||||||| ||||||||||||||||| ||||||    
T  41350463 atgcagatgggctcacattgcaagccacttacctggtagaacagacaatgaaataaagaattactggaattcttggatcaaaaagaaaataagaaag 41350367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 5948292 - 5948223
Alignment:
Q  123 cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca 192  Q
    |||||||||||| |||||||  ||||| ||||| |||||||| ||||| |||||||||| ||||||||||    
T  5948292 cagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaaaaacttttggaattca 5948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 5983905 - 5983836
Alignment:
Q  123 cagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattca 192  Q
    |||||||||||| |||||||  ||||| ||||| |||||||| |||||  | ||||||| ||||||||||    
T  5983905 cagatgggctcagattgcaaaacacttacctggaagaacagataatgaggtgaaaaacttttggaattca 5983836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 53557726 - 53557763
Alignment:
Q  151 cctggtagaacagacaatgaaataaaaaactattggaa 188  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  53557726 cctggaagaacagacaatgacataaaaaactattggaa 53557763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 38707210 - 38707243
Alignment:
Q  154 ggtagaacagacaatgaaataaaaaactattgga 187  Q
    |||||||| |||||||||||||||||||||||||    
T  38707210 ggtagaacggacaatgaaataaaaaactattgga 38707243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 44676906 - 44676854
Alignment:
Q  136 attgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaa 188  Q
    ||||||||||||||||| || ||||||||||| || || |||||||| |||||    
T  44676906 attgcaagtcacttgccaggcagaacagacaacgagattaaaaactactggaa 44676854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University