View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8452_high_12 (Length: 240)

Name: NF8452_high_12
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8452_high_12
NF8452_high_12
[»] chr6 (18 HSPs)
chr6 (18-240)||(33057331-33057553)
chr6 (18-240)||(33644561-33644795)
chr6 (21-240)||(33304240-33304471)
chr6 (18-240)||(33262379-33262613)
chr6 (18-240)||(9166514-9166739)
chr6 (21-240)||(33398828-33399041)
chr6 (52-240)||(33271582-33271779)
chr6 (18-240)||(33387907-33388141)
chr6 (18-129)||(33285347-33285458)
chr6 (146-240)||(33409865-33409959)
chr6 (18-119)||(28870323-28870424)
chr6 (157-237)||(33285501-33285581)
chr6 (52-114)||(31562983-31563045)
chr6 (150-240)||(31562839-31562935)
chr6 (156-232)||(28870198-28870274)
chr6 (55-127)||(33409768-33409840)
chr6 (156-206)||(33358799-33358849)
chr6 (87-128)||(33358714-33358755)
[»] chr2 (1 HSPs)
chr2 (27-240)||(17440901-17441114)
[»] scaffold1408 (1 HSPs)
scaffold1408 (18-240)||(397-631)
[»] scaffold0428 (1 HSPs)
scaffold0428 (18-240)||(6143-6377)
[»] chr4 (8 HSPs)
chr4 (76-232)||(31148108-31148267)
chr4 (146-240)||(31479029-31479123)
chr4 (18-240)||(31472568-31472805)
chr4 (149-240)||(31157122-31157213)
chr4 (143-238)||(31504216-31504311)
chr4 (18-129)||(31499199-31499310)
chr4 (18-127)||(31479154-31479263)
chr4 (76-124)||(31157034-31157082)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33057331 - 33057553
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057331 attattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 33057430  T
Q  118 actatttgaatctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttg 217  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057431 actatttgaatctcagaagaggaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttg 33057530  T
Q  218 gacagttgaaaatgagcaatcct 240  Q
    |||||||||||||||||||||||    
T  33057531 gacagttgaaaatgagcaatcct 33057553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33644795 - 33644561
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| ||||||||||   ||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||| |     
T  33644795 attattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacactttgattgttgatccaacttggtatttcacttcctggagtt 33644696  T
Q  118 actatttgaatctcataagagtaacgtgggt------------ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || |||||| ||  || | ||||   |||||            |||||| |||||||||| |||||||| ||| |||||||||||||||| |||||||||    
T  33644695 acaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctct 33644596  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||||||||| |||||||||||||| |||||||    
T  33644595 cacccaattttgaacagttgaaaatgaccaatcct 33644561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 33304240 - 33304471
Alignment:
Q  21 attgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaact 120  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||  |||| ||||||||||||| ||||||||||| |||||||| ||||     
T  33304240 attgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaattggtatttcatttcctggagtaaca 33304339  T
Q  121 atttgaatctcat--aag----------agtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac 208  Q
    |||||||||  ||  |||          || |  ||| |||||||| |||||||||| ||| |||| ||| ||||||||| |||||| ||||||||||||    
T  33304340 atttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcac 33304439  T
Q  209 ccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||||||||||||||||||||| |||||||    
T  33304440 ccaattttggacagttgaaaatgaacaatcct 33304471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33262379 - 33262613
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| ||| |||||| |||||||||   |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||    
T  33262379 attattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaacttggtatttcatttcctggacta 33262478  T
Q  118 actatttgaatctc------ataag------agtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || ||||||| |||      |||||      || |  || ||| ||| | |||||||||| || ||||| ||| ||||||||| |||||| |||||||||    
T  33262479 acaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaattgtgtcgtccatgaaaatgtcatgctactgcaacgttccctct 33262578  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||||||||||||| |||||||    
T  33262579 cacccaattttggacagttgaaaatgaccaatcct 33262613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9166514 - 9166739
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||||||||   ||||||||||||| |||  | |||  ||| |||||||||||||||||||||||||| |||||||  ||    
T  9166514 attattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttgatccaacttggtatttcaattcctggcgta 9166613  T
Q  118 actatttgaatctcataagagt---aacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaatt 214  Q
    || |||||||||  || | |||   |  |||||||||||| ||| |||||  |||||||| ||| ||||||||| |||||||||||| | |||| |||||    
T  9166614 acaatttgaatcctatcaaagtgggatggtgggtttgcctgaataaattgcatcatccatgaaaatgtcatgctactgcaatgttccttatcactcaatt 9166713  T
Q  215 ttggacagttgaaaatgagcaatcct 240  Q
     ||||||||||||||||| |||||||    
T  9166714 ctggacagttgaaaatgaccaatcct 9166739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 33398828 - 33399041
Alignment:
Q  21 attgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaact 120  Q
    ||||| ||| |||||| ||  ||||||  |||||||| ||||||||| |||||  | ||||||||||||||||||||||||||||||||||||| ||||     
T  33398828 attgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatccaacttggtatttcacttcctggaataaca 33398927  T
Q  121 atttgaatctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggac 220  Q
    ||||||       | | | |  |||| || |||  |||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| ||    
T  33398928 atttgag------aggtggattgtggattggccagaatgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaac 33399021  T
Q  221 agttgaaaatgagcaatcct 240  Q
    |||||||||||| |||||||    
T  33399022 agttgaaaatgaccaatcct 33399041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 33271582 - 33271779
Alignment:
Q  52 tctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatctcat---aagagtaacgtgggt 148  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| | |  || |||| |||||   || |  |  | ||||    
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaataagattgcgggt 33271681  T
Q  149 ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||| ||||||||||| |||||||| ||| ||||| ||| |||||| ||||||||||||      |||||||||||||||||||||||| |||||||    
T  33271682 ttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgaccaatcct 33271779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33387907 - 33388141
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||||||  |   ||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | ||    
T  33387907 attattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttgatccaactcggtatttcacttcctgtagta 33388006  T
Q  118 actatttgaatc---tcataagagtaa---------cgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || |||||||||   ||| || ||  |          || ||||||||||||| |||||| |||||||| ||| ||||||||| ||||||   ||||| |    
T  33388007 acaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctat 33388106  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||| ||||||||||||||||| || |||||||    
T  33388107 cacccagttttggacagttgaaaacgatcaatcct 33388141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 33285347 - 33285458
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||||||||| | ||||||||||||||||  |||||  |||||||| || ||||||||||||||||||||||||||| ||    
T  33285347 attattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatccaacttggtatttcacttcctggagta 33285446  T
Q  118 actatttgaatc 129  Q
    || || ||||||    
T  33285447 acaatatgaatc 33285458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 33409865 - 33409959
Alignment:
Q  146 ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||| |||||| |||  ||||||| ||| ||| ||||| |||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  33409865 ggtttgcctgaatgaaatgtgccatccatgaaattgtgatgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaatcct 33409959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 28870424 - 28870323
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| ||||||||   ||||||||||   ||||||| ||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||| ||    
T  28870424 attattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaacttggtatttcacttcctggagta 28870325  T
Q  118 ac 119  Q
    ||    
T  28870324 ac 28870323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 33285501 - 33285581
Alignment:
Q  157 atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat 237  Q
    ||||||||| |||||||| ||| || |||||| |||||| ||||||| ||||| |||||||||||||||||||||| ||||    
T  33285501 atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 33285581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 31563045 - 31562983
Alignment:
Q  52 tctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctgga 114  Q
    |||||||||||||||| |||||| || ||||||||||||||| | ||||||||||||||||||    
T  31563045 tctattggtattgaatcacccatgctatgattgttgatccaattcggtatttcacttcctgga 31562983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 31562935 - 31562839
Alignment:
Q  150 tgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||||||      ||||||| |||||||| ||||||| |||||||    
T  31562935 tgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcct 31562839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 28870274 - 28870198
Alignment:
Q  156 aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatga 232  Q
    ||||||||||||||||||| ||| || |||||| |  ||| ||||||||||||| || |||||||||||||||||||    
T  28870274 aatgaattgtttcatccatgaaaatgccatgctacaacaacgttccctctcacctaaatttggacagttgaaaatga 28870198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 33409768 - 33409840
Alignment:
Q  55 attggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttgaa 127  Q
    |||| |||||||  |||||  ||||||||||||||||||||||||||||||||||||||| | || |||||||    
T  33409768 attgatattgaagcacccacgctctgattgttgatccaacttggtatttcacttcctggagttacaatttgaa 33409840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 33358799 - 33358849
Alignment:
Q  156 aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctc 206  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  33358799 aatgaattgtttcatccatgaaagtgtcatgctactgcaacgttccctctc 33358849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 33358714 - 33358755
Alignment:
Q  87 gatccaacttggtatttcacttcctggattaactatttgaat 128  Q
    |||||||||| | ||||||||||||||| |||||||||||||    
T  33358714 gatccaacttagcatttcacttcctggagtaactatttgaat 33358755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 17441114 - 17440901
Alignment:
Q  27 attgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttga 126  Q
    |||||||||| ||||||||||  ||||||||  |||||||| |||||  |||| |||||||||||||||||||||||| ||||||||| |||| || |||    
T  17441114 attgtcatgcttaataggagattggtctattcttattgaatcacccacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatatga 17441015  T
Q  127 atctcataagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttga 226  Q
    |||  ||   | ||    ||||||||||||||||||||  |||||||| ||| ||||||||| ||| ||  |||||||||||||||||||||||||||||    
T  17441014 atcctattcaaatagaaagggtttgccttaatgaattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttga 17440915  T
Q  227 aaatgagcaatcct 240  Q
    | |||| |||||||    
T  17440914 agatgaacaatcct 17440901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 397 - 631
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||| | |||||||||  ||| ||||||   ||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  397 attattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttgatccagcttggtatttcacttcctggagta 496  T
Q  118 actatttgaatctcataagagta---ac---------gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || ||||||| ||||||  | ||   ||         || ||||||||| ||||||||||||||||||| ||| ||| ||||| || |||  ||||||||    
T  497 acaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctct 596  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||||||||||||| |||||||    
T  597 cacccaattttggacagttgaaaatgaccaatcct 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 6143 - 6377
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||| | |||||||||  ||| ||||||   ||||||| ||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  6143 attattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttgatccagcttggtatttcacttcctggagta 6242  T
Q  118 actatttgaatctcataagagta---ac---------gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctct 205  Q
    || ||||||| ||||||  | ||   ||         || ||||||||| ||||||||||||||||||| ||| ||| ||||| || |||  ||||||||    
T  6243 acaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctct 6342  T
Q  206 cacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||||||||||||||||||||| |||||||    
T  6343 cacccaattttggacagttgaaaatgaccaatcct 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 31148108 - 31148267
Alignment:
Q  76 ctctgattgttgatccaacttggtatttcacttcctggattaactatttgaatc---tcataagagtaacgtgggtttgccttaatgaattgtttcatcc 172  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||| |||||||||   ||| | ||| |  ||||||| |||  ||||| |||| ||||||    
T  31148108 ctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacatcagatgaggattgtgggttcgcccgaatgagttgtatcatcc 31148207  T
Q  173 ataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatga 232  Q
    || ||| | |||||||  | |||  |||||||||||||||||| ||||||||||||||||    
T  31148208 atgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatga 31148267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 31479123 - 31479029
Alignment:
Q  146 ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    ||||||||| |||||||||| |||||||| ||| ||||||||| || ||| ||||| | ||||||||||| |||||||||||||||| |||||||    
T  31479123 ggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaatcct 31479029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 31472805 - 31472568
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||| |||| |||||   ||||| | |||| |||| |||| |  |||||||||||| ||||||||||||||||||||||||| ||    
T  31472805 attattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttgaaccaacttggtatttcacttcctggagta 31472706  T
Q  118 actatttga---atctcataagagt---------aacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctg---caatgttccc 202  Q
    || || |||   || |||||| |||         |  |||| ||||||| ||||| |||| |||||||| ||| ||||||| |  ||   ||||||||||    
T  31472705 acaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccc 31472606  T
Q  203 tctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||||||| || ||||||||||||||||||||||||    
T  31472605 tctcacccaaattaggacagttgaaaatgagcaatcct 31472568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 31157122 - 31157213
Alignment:
Q  149 ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct 240  Q
    |||||| ||| |||||| |||||||| ||| || ||||||  |||||| ||| |||||||||||||| |||||||||||||||| |||||||    
T  31157122 ttgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaatcct 31157213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 31504311 - 31504216
Alignment:
Q  143 gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatc 238  Q
    ||||||||||||||||||||||| |||||||| ||| |||||| ||  || |   |||||||||| ||||||| |||||||||||||| |||||||    
T  31504311 gtgggtttgccttaatgaattgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaataagcaatc 31504216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 31499310 - 31499199
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||||||  |||| |||||   ||||||| ||||||||| |||| | |||||||| || | |||||||| |||||||||||||||| ||    
T  31499310 attattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattcttaaaccaacttgatatttcacttcctggagta 31499211  T
Q  118 actatttgaatc 129  Q
    || || ||||||    
T  31499210 acaatatgaatc 31499199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 31479263 - 31479154
Alignment:
Q  18 attattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggatta 117  Q
    |||||||| |||||| ||| |||| |||||    |||||| ||||| ||| |||| | ||||||||||||| ||||||||| |||||||| |||||| ||    
T  31479263 attattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttgaaccaacttggcatttcactacctggagta 31479164  T
Q  118 actatttgaa 127  Q
    || |||||||    
T  31479163 acaatttgaa 31479154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 31157034 - 31157082
Alignment:
Q  76 ctctgattgttgatccaacttggtatttcacttcctggattaactattt 124  Q
    ||||||||||||| |||| |||||||||||||||| ||| |||| ||||    
T  31157034 ctctgattgttgaaccaaattggtatttcacttccaggaataacaattt 31157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University