View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8452_high_14 (Length: 228)
Name: NF8452_high_14
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_high_14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 1748727 - 1748949
Alignment:
| Q |
6 |
agtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctc |
105 |
Q |
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| T |
1748727 |
agtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctc |
1748826 |
T |
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| Q |
106 |
tgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcct |
205 |
Q |
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| T |
1748827 |
tgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcct |
1748926 |
T |
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| Q |
206 |
aaacttggtttgttaccatacct |
228 |
Q |
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| T |
1748927 |
aaacttggtttattaccatacct |
1748949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 1754043 - 1754265
Alignment:
| Q |
6 |
agtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctc |
105 |
Q |
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||||||||||||||||||| ||||||||||| ||| | |||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||| | |
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| T |
1754043 |
agtaatgcacatcaaggacaactttgttgaatccagtgacaaatgagagaagtactttagaatctgcatccaatgggtttgacattatcacataagcatt |
1754142 |
T |
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| Q |
106 |
tgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcct |
205 |
Q |
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| T |
1754143 |
tggattgtatttcctcactgcatcataagcctccttgtaatatttcttgaggctatctagattgacaccttgtggctcattcatcaactctattcctcct |
1754242 |
T |
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| Q |
206 |
aaacttggtttgttaccatacct |
228 |
Q |
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| T |
1754243 |
aaacttggtctattaccatacct |
1754265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 1717375 - 1717580
Alignment:
| Q |
6 |
agtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctc |
105 |
Q |
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| T |
1717375 |
agtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaagtttagaatctgtggccaatggatttgacatgatcacataagtatt |
1717474 |
T |
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| Q |
106 |
tgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcct |
205 |
Q |
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|||| ||||||| |||||| ||||||||||| || ||||||| ||||| | ||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1717475 |
tgggatgtatttcctcacaacatcataagcttccctgtaatagttcttcaagctatctagattgacacctagtggctcattcatcagctctattcctcct |
1717574 |
T |
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| Q |
206 |
aaactt |
211 |
Q |
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|||||| |
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| T |
1717575 |
aaactt |
1717580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 1738872 - 1739077
Alignment:
| Q |
6 |
agtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatctccatccaatggatttgacatgatcacataagcctc |
105 |
Q |
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||||||||||||||||||||||||| | ||||| | ||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||| | |
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| T |
1738872 |
agtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaagtttggaatctgtggccaatgggtttgacatgatcacataagtatt |
1738971 |
T |
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| Q |
106 |
tgggttgtattttctcacagcatcataagctgccttgtaatacttcttgagactatcaagattgacaccttgtggctcattcatcagctctattcctcct |
205 |
Q |
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|||| ||||||| |||||| ||||||||||| ||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
1738972 |
tgggatgtatttcctcacaacatcataagctaacttgtaatagttcttgaggctatcttgattgacaccaagtggctcattcatcagctctattcctcct |
1739071 |
T |
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| Q |
206 |
aaactt |
211 |
Q |
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|||||| |
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| T |
1739072 |
aaactt |
1739077 |
T |
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