View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8452_high_2 (Length: 428)
Name: NF8452_high_2
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 982775 - 983170
Alignment:
| Q |
14 |
attattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcaagtctactgattcacccttcaactctcaaacaattcttcaacccagagtta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
982775 |
attattctcttatcaatcaaatcaaaccataattaaaagaaaaagatcatgtctattgattcacccttcaactctcaaacaattcttcaacccagagtta |
982874 |
T |
|
| Q |
114 |
actcagtcaagctttcaaaaatcgttcgatgcaacaagtctctcaaccgacctccatgtgattatgttataatgttgtatgttgtgttcactgattgaga |
213 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
982875 |
actcagtcaggctttcagaaatcattcgatgcaacaagtctctcaaccgacctccacgtgattatgttataatgttgtatgttgtgttcactgattgaga |
982974 |
T |
|
| Q |
214 |
ttgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcgtgaactgaactgctatggtaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
982975 |
ttgttctatattgtacattaatgagtttatacatgtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcatgaactgaactgctatggtaa |
983074 |
T |
|
| Q |
314 |
attaattatatagtacaagtttgtacaagaaaaaatatagtacaatttaaacatttgctacaaaataaagtatataggtattttatgtggcaaaca |
409 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
983075 |
attaataatatagtacaagtttgtacaagaaaaaatatagtacagtttaaacatttgctacaaaataaagtatataggtattttatgtggcaaaca |
983170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University