View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8452_high_9 (Length: 251)

Name: NF8452_high_9
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8452_high_9
NF8452_high_9
[»] chr6 (13 HSPs)
chr6 (1-239)||(33057680-33057918)
chr6 (1-151)||(33262737-33262887)
chr6 (1-151)||(9166863-9167013)
chr6 (1-150)||(33644288-33644437)
chr6 (1-151)||(33399165-33399315)
chr6 (1-112)||(33271936-33272047)
chr6 (1-149)||(33410116-33410264)
chr6 (1-151)||(33304595-33304745)
chr6 (1-101)||(33358978-33359078)
chr6 (1-143)||(33285729-33285871)
chr6 (6-123)||(31562596-31562713)
chr6 (1-151)||(33388271-33388421)
chr6 (1-54)||(28870013-28870066)
[»] scaffold1408 (1 HSPs)
scaffold1408 (1-150)||(758-907)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-150)||(6504-6653)
[»] chr2 (1 HSPs)
chr2 (1-140)||(17440638-17440777)
[»] chr4 (5 HSPs)
chr4 (1-73)||(31498873-31498945)
chr4 (4-73)||(31148417-31148486)
chr4 (7-57)||(31526524-31526574)
chr4 (1-93)||(31157328-31157420)
chr4 (1-73)||(31478818-31478890)
[»] chr7 (1 HSPs)
chr7 (2-49)||(6785236-6785283)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33057680 - 33057918
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33057680 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgcatcaggcacatggcttagatagcaaa 33057779  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaacatatgtgatgaatcgtgagccaaaatgatccattttaggccagggaggtg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057780 agcttatgtcaaccttacgcaaacaacataaactatgcaaggaaggcaacatatgtgatgaatcgtgagccaaaatgatccattttaggccagggaggtg 33057879  T
Q  201 atgtgatgcactttcacgtatatcatgctgctgcttctt 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33057880 atgtgatgcactttcacgtatatcatgctgctgcttctt 33057918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33262737 - 33262887
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||  ||||||| |||| |||||||||||    
T  33262737 ctcaggctaggtagtgtcacaaaatcatttccccctaaatttaatctttctagccaatgtaagcattcaattgtgccaggcacttggcgtagatagcaaa 33262836  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca 151  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||||    
T  33262837 agcttatgtcaacattacgcaaacaatgtaaactacgcaaggaaggcaaca 33262887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9166863 - 9167013
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    |||| |||||||| |||| |||||||| ||||| |||| |||||||||||||||||  ||||||||||||||||||||||||  |||||||||| ||||     
T  9166863 ctcaagctaggtagtgtcgcaaaatcgattccccctaagtttaatctttctagccaccgtaaacattcaattgtatcaggcaattggcttagatggcaat 9166962  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca 151  Q
    |||| |||||||| | |||||||||| ||||||||||||||||| ||||||    
T  9166963 agctaatgtcaacttcacgcaaacaatataaactacgcaaggaatgcaaca 9167013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 33644437 - 33644288
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||  ||||     
T  33644437 ctcaggctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaatgtaaacattcaattgaatcaggaacatggcttagacggcaat 33644338  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaac 150  Q
    |||| |||||||   ||||||||||| |||| ||| ||||||| ||||||    
T  33644337 agctaatgtcaatgctacgcaaacaatataagctatgcaaggatggcaac 33644288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33399165 - 33399315
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||| ||||||||||| |||||||  ||||||||||||||||||||||||||||  |||||||| |||||| || |||||||||| |||||    
T  33399165 ctcaggctaggtagtgtcacaaaattgtttccctttaaatttaatctttctagccaatgtaaatcttcaattgcatcaggaacttggcttagattgcaaa 33399264  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca 151  Q
    |||| ||||||||   ||||||||||  ||| ||| ||||||| |||||||    
T  33399265 agctaatgtcaactccacgcaaacaatctaagctatgcaaggatggcaaca 33399315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 33271936 - 33272047
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||| || |||| ||||| |||||    
T  33271936 ctcaggctaggtagtgtcacaaaattgtttccccctaaatctaatctttctagccaatgtaaacattcaattgcatcaggaacttggcgtagatggcaaa 33272035  T
Q  101 agcttatgtcaa 112  Q
    |||| |||||||    
T  33272036 agctaatgtcaa 33272047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 33410116 - 33410264
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    |||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| || ||| |||||| |||||    
T  33410116 ctcaagctaggtagtgtcacaaaatagtttcccgctaaatataatctttctagcgaatgtaaaccttcaattgcatcaggaacttggtttagatggcaaa 33410215  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaa 149  Q
    |||| || ||||| | |||||||||| |||| ||| |||| || |||||    
T  33410216 agctaatatcaacttgacgcaaacaatataagctatgcaatgatggcaa 33410264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33304595 - 33304745
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    |||||||||||||  |||||||||| ||||||| |||| ||||||||||||||| | | |||||||||||||| |||||| || |||||||||| |||||    
T  33304595 ctcaggctaggtagagtcacaaaattgtttccctctaagtttaatctttctagcgagtataaacattcaattgcatcaggaacttggcttagatggcaaa 33304694  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca 151  Q
    |||| |||||||| |  |||||||||  ||| ||| ||||||| |||||||    
T  33304695 agctaatgtcaacgtctcgcaaacaaactaagctatgcaaggatggcaaca 33304745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 33358978 - 33359078
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| || || || ||||||| |||||    
T  33358978 ctcaggctaggtagtgtcacaaaatcgtttccccctaaatttaatatttctagccaatgtaaacattcaattgcatcgggaacttgacttagatggcaaa 33359077  T
Q  101 a 101  Q
    |    
T  33359078 a 33359078  T

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Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 33285729 - 33285871
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||| ||  | ||| |||||||||  |||||    
T  33285729 ctcaggctaggtagtgtcacaaaattgtttccccctaagtttaatatttctagccaatataaacattcaattgcatatgacacttggcttagacggcaaa 33285828  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaagga 143  Q
    |||| |||| ||| | |||||||||| |||| ||| |||||||    
T  33285829 agctaatgttaacttcacgcaaacaatataagctatgcaagga 33285871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 31562713 - 31562596
Alignment:
Q  6 gctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagctt 105  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||| |   |||||||||||||| ||||||||| |||||||||  |||||||||     
T  31562713 gctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgagcttaaacattcaattgcatcaggcacttggcttagacggcaaaagcta 31562614  T
Q  106 atgtcaaccttacgcaaa 123  Q
    ||||||||  ||||||||    
T  31562613 atgtcaactgtacgcaaa 31562596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33388271 - 33388421
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||  | |||||||||||||||| ||| || || ||  ||||||  ||||    
T  33388271 ctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaa 33388370  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca 151  Q
    |||| |||||||| ||||||||||||  ||| ||| ||| ||| |||||||    
T  33388371 agctaatgtcaactttacgcaaacaatttaagctatgcacggatggcaaca 33388421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28870066 - 28870013
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagc 54  Q
    ||||||||||| | ||||||||||| |||||||  ||| |||||||||||||||    
T  28870066 ctcaggctaggcagtgtcacaaaatagtttccccgtaagtttaatctttctagc 28870013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 758 - 907
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    |||| |||||||| |||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||    
T  758 ctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacatggcttagatggcaaa 857  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaac 150  Q
    |||| |||||||  |||||||||||| ||||| |||| ||| ||||||||    
T  858 agctaatgtcaatgttacgcaaacaatataaaatacgaaagcaaggcaac 907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 6504 - 6653
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    |||| |||||||| |||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||    
T  6504 ctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacatggcttagatggcaaa 6603  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaac 150  Q
    |||| |||||||  |||||||||||| ||||| |||| ||| ||||||||    
T  6604 agctaatgtcaatgttacgcaaacaatataaaatacgaaagcaaggcaac 6653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 17440777 - 17440638
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaa 100  Q
    ||||||||||||| |||| ||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||  |||||    
T  17440777 ctcaggctaggtagtgtcgcaaaatcatttccccctaaatttaatctttctacccaatgtaaacattcaattgtatccggcacttggcttagacggcaaa 17440678  T
Q  101 agcttatgtcaaccttacgcaaacaacataaactacgcaa 140  Q
    | || |||||||| | |||||||||| |||| ||| ||||    
T  17440677 aactaatgtcaacttcacgcaaacaatataagctatgcaa 17440638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31498945 - 31498873
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg 73  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||   ||||| ||||||||||||| ||||||    
T  31498945 ctcaggctaggtaatgtcacaaacttgtttccccctaaatttaactcttctaaccaatgtaaacatccaattg 31498873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 31148417 - 31148486
Alignment:
Q  4 aggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg 73  Q
    ||||||||||  |||||||||| ||||||| ||| ||||||||||||||||||| |||||| | ||||||    
T  31148417 aggctaggtaccgtcacaaaattgtttccccctagatttaatctttctagccaacgtaaacgtccaattg 31148486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 31526524 - 31526574
Alignment:
Q  7 ctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaa 57  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||| ||||    
T  31526524 ctaggcaatgtcacaaaattgtttccccctaaatttaatctttctaaccaa 31526574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31157328 - 31157420
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttaga 93  Q
    ||||||||||| | ||||||||||| ||| ||| ||| ||||||||||||||| | | ||| |||| |||||| |||||| | || |||||||    
T  31157328 ctcaggctaggcagtgtcacaaaattgttcccccctatatttaatctttctagtcgaagtagacatccaattgcatcagggagatagcttaga 31157420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31478890 - 31478818
Alignment:
Q  1 ctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg 73  Q
    ||||| ||||||| ||||||||||| ||||||| |||||||||||  ||||| ||||| || |||| ||||||    
T  31478890 ctcagactaggtactgtcacaaaattgtttccccctaaatttaatgcttctaaccaatatagacatccaattg 31478818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 6785283 - 6785236
Alignment:
Q  2 tcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatcttt 49  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  6785283 tcaggctaggcaatgtcacaaaatggtttccccctaaatttaatcttt 6785236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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