View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8452_low_1 (Length: 1019)
Name: NF8452_low_1
Description: NF8452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8452_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 472 - 873
Target Start/End: Original strand, 5027759 - 5028162
Alignment:
| Q |
472 |
cacgtgagtgttttggggttggagttattgcgtgcgggatggagcagggaagatatagtgtactcgcttggggttgatgtaggaaattcgtggttggatt |
571 |
Q |
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| T |
5027759 |
cacgtgagtgttttggggttggagttattgcgtgcgggatggagcagggaagatatagtgtactcgcttggggttgatgtaggaaattcgtggttggatt |
5027858 |
T |
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| Q |
572 |
tgaaatttgattgttgatagtcaactaaggggtccctttgaccatacannnnnnnct--gttaatatttgctatttattttagaatacaaaaaactagta |
669 |
Q |
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| T |
5027859 |
tggaatttgattgttgataatcaactaaggggtccctttgaccatacatttttttctttgttaatatttgctatttattttagaatacaaaaaactagta |
5027958 |
T |
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| Q |
670 |
ccagtagttttgtcgattaaataaactattactagtggtagaatataaaaagagatggtattcttttctgtagac-aacaaaattgtgaggcaaaatgga |
768 |
Q |
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| T |
5027959 |
ctagtagttttgtcgattaaataaactagtactagtggtagaatataaaaagagatggtattcttttttgtagacgaacaaaatcgtgaggcaaaatgga |
5028058 |
T |
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| Q |
769 |
ttggtgtttggcatggcaacacagattttgtattttattttagtggactccattcatagaattaaatgattatttattatattttaattgagtgatagag |
868 |
Q |
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| T |
5028059 |
ttggtgtttggcatggcaacacagattttgtattttattttagtggac-agattcatagaattaaatgattatttattatattttaattgagtgatagag |
5028157 |
T |
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| Q |
869 |
ttcaa |
873 |
Q |
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| T |
5028158 |
ttcaa |
5028162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 5027305 - 5027544
Alignment:
| Q |
18 |
gggtccaatcccgaaagataagctaaccgcggcgcagaggattttggactctgcgccgcagttagttccgatctttcggcattgttatatacctatgaat |
117 |
Q |
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| T |
5027305 |
gggtccaatcccgaaagataagctaaccgcggcgcagaggattttggaccctgcaccgcagttagttccgatctttcggcattgttatatacctatgaat |
5027404 |
T |
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| Q |
118 |
ccgtttgttactgggaatccggttttttacgttgatcatggtggtgatgtgaaattggtgagttatgatattgtggggttttttagggatggagggtttt |
217 |
Q |
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| T |
5027405 |
ccgtttgttactgggaatccggtattttacgttgatcatagtggtgatgtgagattggtgggttatgatattgtggggttttttagggatggagggtttt |
5027504 |
T |
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| Q |
218 |
tggatggggttgaagaggtggatgatccggtttgggcggc |
257 |
Q |
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| T |
5027505 |
tggatggggttgaagaggtggatgatccggtttgggcggc |
5027544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 894 - 1004
Target Start/End: Original strand, 5028154 - 5028264
Alignment:
| Q |
894 |
agagttcaatttgttcatagattttagagtattttattattaaaatggtaaatatcttttgtatttaataggtgtcttttgtattgaatatgaaacgtgt |
993 |
Q |
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| T |
5028154 |
agagttcaatttgttcatagattttagagtattttattattaaaatggtaaatatcttttgtatttaataggtgtcttttgtattgaatatgaaacgtat |
5028253 |
T |
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| Q |
994 |
tatatttgatt |
1004 |
Q |
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| T |
5028254 |
catatttgatt |
5028264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 363 - 401
Target Start/End: Original strand, 5027650 - 5027688
Alignment:
| Q |
363 |
tatggatggggtgctgcggaggttgagggaaggtgggtg |
401 |
Q |
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| T |
5027650 |
tatggatggggtgctgcggaggttgagggaaggtgggtg |
5027688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 931 - 987
Target Start/End: Original strand, 2773522 - 2773578
Alignment:
| Q |
931 |
tattaaaatggtaaatatcttttgtatttaataggtgtcttttgtattgaatatgaa |
987 |
Q |
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||||| ||| ||||||||||||||||||||| | || ||||||||||| |||||||| |
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| T |
2773522 |
tattagaatagtaaatatcttttgtatttaaaatgtatcttttgtatttaatatgaa |
2773578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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